Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01386 ATGCAATTAAATAGACAACCATTCATCATTCAACGTTTGAGGAAGCCATCTCGAAATTTTCCACCTCTTCCTTGTTTCGTCGTATGTTTATATGCAGCCATCTGGTCCAGTCCTCTGTTCTTCTCTGCAGCTCAAGAAATCATGGAGAAAGATTCAAACTCCTCATTGAAATCAGCCCTTCTTCACATTTCTGAAGATGGGTTGGATTCAAATGGCGAGAGAAGGAAGCTCATAGCAGAGGAAGTAAAGAAGCAGCTATGGCTTGCAGGGCCGCTGATATTGGTCAGTCTTTTACAATACTGTTTGCAGATGATATCCGTCATGTTTGTGGGTCATCTGGGCGAGCTGCCCCTCTCTGGTGCTTCAATGGCCACTTCTTTTGCTTCTGTGACTGGTTTCAGCTTGTTGGTGGGTATGGCTAGTGCTTTGGATACATTTTGTGGGCAATCTTATGGAGCAAAGCAGTATCATATGCTGGGCATTCATATGCAAAGAGCAATGGTTGTTCTTTTACTTGTGAGTATACCTCTTGCAGTCATCTGGGCTAACACAGGAGAAATCCTGAGATTACTTGGTCAAGATCCTGAAATTTCAGCAGAAGCTGGGAAATATGCTATTAGTATGATACCAAGCCTTTTTGCTTATGGTCTTCTTCAATGCCTTAATAGATTCTTACAGACCCAAAATGTTGTTTTCCCAATGGTTATGAGTTCTGGAATAGCTGCTTTGCTTCATATCCCCATATGTTGGGTTCTGATATTCAAAGTTGGACTTGAAATTCGAGGAGCTGCTGTGGCTAACTCCATCTCTTATTGGCTCAATGTGTTGATATTAACACTTTATGTTAAGTTTTCTTCTTCTTGTTCGAGTTCTTGGACTGGGTTTTCAGTGCAGGCTTTTCACAATATCCCTTATTTCCTTAAACTTGCAATTCCTTCGGCTTGTATGGTTTGCTTGGAAATGTGGTCATTTGAGATGATGGTTCTTCTTTCTGGGCTTCTACCAAATCCAAAATTAGAGACATCAGTGCTTTCAATCAGCACACGAGTCTCAAATGAACTAGGAGCTGGGCATCCTGCAGCAGCAAAGCTTGCTGGGAAAGTAGTTATGACAATAGCCATTATTGAGGGGCTACTGCTTGGAATTGTCTTAATTCTTATACGTACTGTTTGGGGCTATGCTTATAGCAACGAACGAGAAGTGGTCGAATATGTAGCCAACATGCTTCCTTTAGTTGCAGCTTCCAATTTTAAGATTGGTGCATATGTGAATCTTGGATCATATTATATTGTGGGAATTCCATCTGCAGTTTTGCTTGCTTTTGTTTTGCACATTGGTGGAAGGGGGCTGTGGTTAGGCATCATTTGTGCACTCATTGTCCAAGCACTTTCTCTTGCTATCATTACCATCCGCACCAACTGGGACCAAGAAGCAAAGATAGCTACAGAACGTGTGTATGACACTGTAATCCCAGTGAACGTTGTCTCAGCAATAATGGAGAGAGATCAGAAGTCGTGGTTGAACTCGCCTCTAATTCACATATCTGAAGATGAAGTGAATCCGAAAGACGGGAGACTAGTAGATGATAACAATTTCTCAAGAAAACTAATAGCCGAGGAAGTAAAGAAGCAGCTATGGCTAGCAGGACCTCTAATATCGGTCAGTTTTCTGCAATACTGTTTGCAGATGATTTCCATCATGTTTGTGGGTCATCTCGGCGAATTGCCTCTCTCCGGTGCTTCCATGGCCGTTTCTTTTACATCGGTGACTGGTTTCACCGTCTTGATGGGGATGGCTAGTGCTCTGGATACGTTTTGTGGCCAATCTTACGGAGCAAAGCAGTACCACATGTTGGGCATCTATATGCAAAGAGCAATGGTTATTCTTTTACTTGTGAGCATACCTCTTGCAGTCATCTGGGCTAACACAGGAGAAATCCTGAAATTACTTGGCCAAGATGCTCAAATTTCAGCAGAAGCTGGGAAATATGCTAAATGCTTGATTCCATGCCTTTTTGCTCATGGTCTTGTTCAGTGCCTGAACAGATTTTTACAGACCCAAAACATTGTTTTCCCAATGATGATGAGTTCTGGAATAGCAGCTTTGCTTCACATTGCCCTCTGTTGGGTTATGATATTCAAAGCTGGGCTTGAAACTCGAGGAGCTGCTTTGGCAAACTCCATTTCTTATTGGATCAATGCATTGATATTGATACTTTATGTTAAGTTTTCTTCTTCATGTTCAGAGTCTTGGACTGGCTTTTCAGCGCAGGCATTTCACAACATCTCATATTTCCTTAAACTTGCAATCCCTTCAACTGTCATGCTTGGAACTGTGGTCATTCGAGATGGTGGTTCTTCTGTCTGGACTTTTACCAAATCCAAAATTAGAGACATCAATTTAACCGTTTGGATGATACCAATGGGTCTGAGTGCTGCTGCTAGCACGCGAGTTTCAAATGAACTGGGAGCTGGTCGTCCTGCAGGTGCAAAGCTAGCAGCGTGTCTAGTTATGACAATAGCCGTTATTGAGGGGCTACTGCTTGGGACTGTCTTGATTCTTATACGAAATGTTTGGGGTTATGCATATAGCAATGAACAAGAAGTGGTCAAATATGTTGCGGATATAGTTCCCATAATTGCAGTGTCCACTTTCTTCGATGGACTTCAGTGTGTTCTTTCAGGCATTGTTAGAGGATGTGGTTGGCAGAAAATTGGGGCATATGTCAATCTTGGATCGTATTATCTTGTGGGTATTCCATCTGCAGTTTTGCTTGCTTTTGTCTTGCACATTGGTGGAAAGGGGCTGTGGTTAGGCATCATCTCTGCACTGGCTGTCCAAACACTCTCTCTTGCCATCATTACCATCCGCACCAACTGGGACGAAGAAGCAAAGATAGCTGCAGAACGAGTGTACGAGTCAGTCATTCCAACGAATGTCATCGCATGA 2949 42.69 MQLNRQPFIIQRLRKPSRNFPPLPCFVVCLYAAIWSSPLFFSAAQEIMEKDSNSSLKSALLHISEDGLDSNGERRKLIAEEVKKQLWLAGPLILVSLLQYCLQMISVMFVGHLGELPLSGASMATSFASVTGFSLLVGMASALDTFCGQSYGAKQYHMLGIHMQRAMVVLLLVSIPLAVIWANTGEILRLLGQDPEISAEAGKYAISMIPSLFAYGLLQCLNRFLQTQNVVFPMVMSSGIAALLHIPICWVLIFKVGLEIRGAAVANSISYWLNVLILTLYVKFSSSCSSSWTGFSVQAFHNIPYFLKLAIPSACMVCLEMWSFEMMVLLSGLLPNPKLETSVLSISTRVSNELGAGHPAAAKLAGKVVMTIAIIEGLLLGIVLILIRTVWGYAYSNEREVVEYVANMLPLVAASNFKIGAYVNLGSYYIVGIPSAVLLAFVLHIGGRGLWLGIICALIVQALSLAIITIRTNWDQEAKIATERVYDTVIPVNVVSAIMERDQKSWLNSPLIHISEDEVNPKDGRLVDDNNFSRKLIAEEVKKQLWLAGPLISVSFLQYCLQMISIMFVGHLGELPLSGASMAVSFTSVTGFTVLMGMASALDTFCGQSYGAKQYHMLGIYMQRAMVILLLVSIPLAVIWANTGEILKLLGQDAQISAEAGKYAKCLIPCLFAHGLVQCLNRFLQTQNIVFPMMMSSGIAALLHIALCWVMIFKAGLETRGAALANSISYWINALILILYVKFSSSCSESWTGFSAQAFHNISYFLKLAIPSTVMLGTVVIRDGGSSVWTFTKSKIRDINLTVWMIPMGLSAAASTRVSNELGAGRPAGAKLAACLVMTIAVIEGLLLGTVLILIRNVWGYAYSNEQEVVKYVADIVPIIAVSTFFDGLQCVLSGIVRGCGWQKIGAYVNLGSYYLVGIPSAVLLAFVLHIGGKGLWLGIISALAVQTLSLAIITIRTNWDEEAKIAAERVYESVIPTNVIA 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11213709 11221274 - Cp4.1LG04g13910.1 Cpe04g01386 468948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01386 982 Pfam MatE 802 923 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe04g01386 982 Pfam MatE 345 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe04g01386 982 Pfam MatE 550 710 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe04g01386 982 Pfam MatE 91 251 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe04g01386 982 CDD MATE_eukaryotic 81 479 IPR045069 GO:0042910|GO:1990961
Cpe04g01386 982 TIGRFAM matE: MATE efflux family protein 91 331 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe04g01386 982 TIGRFAM matE: MATE efflux family protein 550 780 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe04g01386 982 PANTHER PROTEIN DETOXIFICATION 72 484 - -
Cpe04g01386 982 PANTHER PROTEIN DETOXIFICATION 529 970 - -
Cpe04g01386 982 CDD MATE_eukaryotic 540 965 IPR045069 GO:0042910|GO:1990961
Cpe04g01386 982 PANTHER MULTIDRUG RESISTANCE PROTEIN 72 484 - -
Cpe04g01386 982 PANTHER MULTIDRUG RESISTANCE PROTEIN 529 970 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01386 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101217888 775.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01386 Cpe-Chr4:11213709 Cpe15g00747 Cpe-Chr15:7760276 8.62E-72 dispersed
Cpe04g01582 Cpe-Chr4:12356978 Cpe04g01386 Cpe-Chr4:11213709 1.62E-130 transposed
Cpe06g00682 Cpe-Chr6:4234428 Cpe04g01386 Cpe-Chr4:11213709 5.19E-81 transposed
Cpe14g00336 Cpe-Chr14:2038798 Cpe04g01386 Cpe-Chr4:11213709 2.09E-87 transposed
Cpe01g01317 Cpe-Chr1:7920100 Cpe04g01386 Cpe-Chr4:11213709 6.04E-123 wgd
Cpe18g00689 Cpe-Chr18:6869112 Cpe04g01386 Cpe-Chr4:11213709 7.70E-139 wgd
Cpe04g01386 Cpe-Chr4:11213709 Cpe09g00331 Cpe-Chr9:2004835 6.85E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g385 . . . . . . . . . . . . . . . . . Bhi07g01255 . . . Hepe01g1150 . . . . . . . . . . Cone19ag0795 . . Lsi04g00208 Csa05g02659 . Cme10g00212 . . . . . . . . . . . . . . . . Cpe04g01386 . . . . . . . . . . . . . . . . . .
Vvi17g256 . . . . . . . . . . . Cma11g00296 . . . . Cpe04g01386 Bhi02g00113 . . . . . . . . . . . . . . . . . . . . . . Blo15g00062 . . . . . . . Cmo10g00339 Cmo11g00301 . . . . . . . . . . . . . . . . . . . . . Csa01g00418 Chy02g02328 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01386 Cpe_Chr04 FPKM 2.895623 4.324353 5.046267 6.113853 21.79134 18.757036 20.555565 6.262408 5.477805 5.049893