Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01388 ATGGCCGATAGCGCTAAATCAGTTCTTGAAGAGGAAACTTCGAAGCTTGAAACCAAGTCCAAGCGCGGCGTAGATGTCGAGGATGCTGATGTCACTGTGAAGAAGTTTAAAACGGAAGCTACTGCCGATGTAGCCGACAAAACTGGAGACTGTGCCGGCAGGAAGTTGGAAACTGTTAATGGTGATGAAGAAAATAAGGTCATCAGGATGGGAGTCAAGTTTGAGATTGAAGCGGATGCAGCAGAAGATAAAGGGTCCAGGCATACAATGGAGGATGCTTGGGTTTTGCTTTTGGATGCGAGCTTGGATTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACATGGAGGTCGGTTAGCTGCCGAGTACGCTCAAAAGCATTTGCATGTGAATGTTCTCTCAGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTCCGGAAAACTGATGAGTCTCTTCTTCAAGAAAGTTCTGCTGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTATTAGGTCAAACGGTTTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCACGATCTTCGACTACTGAAAAATTGTCTAATAATCTTAATGGAGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAACACAAGGCAATCTACCCACAAGAAAGAGCTCGTATTCAAAAGGCTGGTGGCGTTGTTGGTTCAAATGGTCGATTGCAGGGCCGTCTTGAAGTTTCTCGGGCACTTGGAGATCGCCAATTTAAAAAGTTGGGCGTTATTGCAACTCCAGACATTCATTCTTTTGAATTGACTGATAGGGAGCATTTTATCATTCTCGGATGTGATGGACTTTGGGGGGTTTTTGGACCAAGCGATGCTGTCGATTTTGTCCAGAAATTATTGCAGGAGGGCTTGCCCATAACATCAGTAAGTCGACGTCTTGTGAGGGAAGCTATTCGTGAACGGCGCTGTAAAGATAACTGTACTGCAATGGTCATTGTTTTCAGGCCCAAGTGA 1065 44.88 MADSAKSVLEEETSKLETKSKRGVDVEDADVTVKKFKTEATADVADKTGDCAGRKLETVNGDEENKVIRMGVKFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEYAQKHLHVNVLSAGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVARSSTTEKLSNNLNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRALGDRQFKKLGVIATPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLQEGLPITSVSRRLVREAIRERRCKDNCTAMVIVFRPK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11226445 11235021 - Cp4.1LG04g13920.1 Cpe04g01388 468950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01388 354 Gene3D - 59 352 IPR036457 -
Cpe04g01388 354 PANTHER PROTEIN PHOSPHATASE 2C 22 348 IPR015655 GO:0004722|GO:0006470
Cpe04g01388 354 SUPERFAMILY PP2C-like 71 352 IPR036457 -
Cpe04g01388 354 MobiDBLite consensus disorder prediction 1 22 - -
Cpe04g01388 354 Pfam Protein phosphatase 2C 81 340 IPR001932 -
Cpe04g01388 354 CDD PP2Cc 81 351 IPR001932 -
Cpe04g01388 354 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 22 348 - -
Cpe04g01388 354 SMART PP2C_4 59 349 IPR001932 -
Cpe04g01388 354 ProSiteProfiles PPM-type phosphatase domain profile. 77 351 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01388 Cpe-Chr4:11226445 Cpe02g00026 Cpe-Chr2:140957 4.45E-34 dispersed
Cpe04g01388 Cpe-Chr4:11226445 Cpe06g00012 Cpe-Chr6:44878 2.50E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01388 K17500 - csv:101216467 602.823