Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01391 ATGAACAAATTCGCTTCGGGAGCACTTACAGAATCTTCCTTCGACGGCGAATCGTTGCCGGACGAGAAGAGCCTGAATCGAGACCTGGCTGGGGATGAAACCAAGCATGGAGGAAAGGCATTGGGCTTCCGGTTCGTTGCTTACTCCGTCGCGATCCAGTCGTTGAACAGCGACGGCTATCAAAGTCCCCAAATTCACCATTCAAATCCCCTTCAGAACATTCTCATGAGTTCCACTGGGTTCTTTATGCAATTGGAATCCGATACTGCGTCCAGATACTGTCCATTATTCGACTTTCGAAGCAACCGGAAGGAGAAATCATCTATACGCATTTCGCTGCTGTGTGTGAAAATGAAGGTGGCGACAGTACCGTTCGAGTCAGGAATGAGCTTCGGGTTCAAGAATTTGATGGAAACGTTCACAGTGAATGTGCAGAGAGCAGAAAGTAGGGCACTGAATGTTCCATTGTTTGAGCCGTTTACGATTGCGTCTTCGAGGCTTGAAATGGTGGAGAACGTAGCGATAAGGATCGAGTTGAGTAATGGGTGCGTCGGATGGGGTGAGGCGCCGATTTTGCCTTTTGTCACTGCGGAGGATCAGTCTACCGCGATGGCGAAGGCAGGGGAGGTTGGTGAACTATTGCAGCAGAGACCACCGTGCAATTTGGGCTCAGCGATGATGCAGATCGGCGAGACTCTTCCTGGCCATGAATTTGCTTCTGTTAGAGCAGGAGTTGAGATGGCGTTGATTGATGCAGTTGCTAACAGCATTAACATACCTCTATGGAGATTGTTTGGTGGTGTTTCAAACAGTATAACCACCGACATAACAATTCCTATTACTTCTGCTTCTAATGCTGCCAAATTGGCTGCGAAATATCGAGATCAAGGATTCAAGACGTTGAAGTTAAAGGTAGGAAAGGATCTAAGAGCTGATATAGAAGTTCTGCAGCGCATCAGAACTGTTCATTCTGATTGTGAATTCATCCTGGATGCCAATGAGGGATATGACACTGAGGAAGCTATTCAAGTTCTTGAAAAGTTACATGAATTGGGGGTGACTCCGACTCTGTTTGAACAACCAGTTCATAGAGACAACTGGGAGGGTCTCGGAATTGTTAGTCGTATCGCTAGAGATAAATACGGGGTATCTGTTGCAGCTGATGAGAGCTGCCGGAGTTTAAGTGATGTTAAGAGAATAGTGGAAGAGGATCTTGCAGATGTTATAAATATAAAGCTTGCCAAAGTTGGAGTTTTGGGGGCAATTGAAATTATTGAAGTAGCAAGGGCTGCTGGATTGAGTTTAATGATTGGTGGTATGATAGAGACTCGACTTGCCATGGGCTTTTCCAGTCATCTTGCTGCTGGTCTCGGATACATCGACTTAGATACACCACTTTTATTGTCAGAAGATCCAGTTCATGGGGGTTATGAAGTTTCTGGTGCTGTCTACAAGTTCACAAATGCCAGAGGCCATGTTGAATCGTCTAAATTAACAGAACTTTCGCTTCATGATTTCCCCCGAGCCAAAGTCTTTCCGAGTACAAATGTCTGGGCAAATCTGTCAAATGAAATGGTAATGGTGGAAGCCGTGACATGCAACCCAATGCAAATGAGCCCTTGTATTAGCGCCATCATATCATCAACGCCGCCCTCCAAGCTGTGCTGTGCCAAGATCAAGGAGCAGAAGCCTTGTCTCTGTGATTACCTCAAGAACCCTTCTCTCAGGAACTTTGTGGACTCTCCAAATGCCAGGAAAGTCGCCAATGACTGTGGAACTCCTTTTCCCACTTGCTGA 1797 46.24 MNKFASGALTESSFDGESLPDEKSLNRDLAGDETKHGGKALGFRFVAYSVAIQSLNSDGYQSPQIHHSNPLQNILMSSTGFFMQLESDTASRYCPLFDFRSNRKEKSSIRISLLCVKMKVATVPFESGMSFGFKNLMETFTVNVQRAESRALNVPLFEPFTIASSRLEMVENVAIRIELSNGCVGWGEAPILPFVTAEDQSTAMAKAGEVGELLQQRPPCNLGSAMMQIGETLPGHEFASVRAGVEMALIDAVANSINIPLWRLFGGVSNSITTDITIPITSASNAAKLAAKYRDQGFKTLKLKVGKDLRADIEVLQRIRTVHSDCEFILDANEGYDTEEAIQVLEKLHELGVTPTLFEQPVHRDNWEGLGIVSRIARDKYGVSVAADESCRSLSDVKRIVEEDLADVINIKLAKVGVLGAIEIIEVARAAGLSLMIGGMIETRLAMGFSSHLAAGLGYIDLDTPLLLSEDPVHGGYEVSGAVYKFTNARGHVESSKLTELSLHDFPRAKVFPSTNVWANLSNEMVMVEAVTCNPMQMSPCISAIISSTPPSKLCCAKIKEQKPCLCDYLKNPSLRNFVDSPNARKVANDCGTPFPTC 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11250508 11257606 + Cp4.1LG04g13810.1 Cpe04g01391 468953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01391 598 PANTHER O-SUCCINYLBENZOATE SYNTHASE-RELATED 129 494 - -
Cpe04g01391 598 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 532 598 IPR036312 -
Cpe04g01391 598 CDD nsLTP2 533 598 IPR033872 GO:0006869
Cpe04g01391 598 Pfam Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 154 266 IPR013341 -
Cpe04g01391 598 SUPERFAMILY Enolase N-terminal domain-like 143 267 IPR029017 -
Cpe04g01391 598 SFLD muconate cycloisomerase 144 491 - -
Cpe04g01391 598 SMART MR_MLE_2 283 377 IPR013342 -
Cpe04g01391 598 PANTHER O-SUCCINYLBENZOATE SYNTHASE 129 494 - -
Cpe04g01391 598 MobiDBLite consensus disorder prediction 16 31 - -
Cpe04g01391 598 Pfam Enolase C-terminal domain-like 288 479 IPR029065 -
Cpe04g01391 598 Gene3D - 151 257 IPR029017 -
Cpe04g01391 598 SFLD Enolase 144 491 - -
Cpe04g01391 598 Pfam Probable lipid transfer 532 593 IPR016140 -
Cpe04g01391 598 Gene3D - 531 598 IPR036312 -
Cpe04g01391 598 MobiDBLite consensus disorder prediction 1 31 - -
Cpe04g01391 598 SMART aai_6 533 598 IPR016140 -
Cpe04g01391 598 Gene3D - 258 479 IPR036849 -
Cpe04g01391 598 CDD L-Ala-DL-Glu_epimerase 146 468 IPR034603 GO:0016855
Cpe04g01391 598 SUPERFAMILY Enolase C-terminal domain-like 257 491 IPR036849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01391 - - - csv:101215507 691.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00988 Cpe-Chr3:7988495 Cpe04g01391 Cpe-Chr4:11250508 6.56E-18 dispersed
Cpe20g00134 Cpe-Chr20:750843 Cpe04g01391 Cpe-Chr4:11250508 1.03E-17 dispersed
Cpe06g00915 Cpe-Chr6:6386191 Cpe04g01391 Cpe-Chr4:11250508 5.67E-20 transposed
Cpe13g01139 Cpe-Chr13:9068340 Cpe04g01391 Cpe-Chr4:11250508 2.20E-141 transposed
Cpe20g00133 Cpe-Chr20:743756 Cpe04g01391 Cpe-Chr4:11250508 4.46E-31 wgd
Cpe04g01391 Cpe-Chr4:11250508 Cpe09g01131 Cpe-Chr9:9703366 5.55E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g284 . . . . . . . . . . . Cma11g00289 . Car11g00263 . . Cpe04g01391 . . . . . . . Cla06g01449 Cam06g1602 Cec06g1664 Cco06g1658 Clacu06g1567 Cmu06g1520 Cre06g2331 . . . . . . . . . . . . . . . . . . Cmo11g00292 . . . . . . . . . . . . . . . . . . . . Lsi06g01315 Csa01g00401 Chy02g02348 Cme02g01725
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002956 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01391 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0