Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01400 ATGGATCCTGAGTTGCAGTCCTTCAAGCCATCCTTCTCCTTCCCTGACTTCACGGATCCCAATTTTGAGCTAATGGGTCACTATTCCGCTTCCAACCCAGTTGTTCTAGACAACCCATCTCTGAATTTCACTAACCTCTTGCCTTTCTCAAACGACATGTTCATCCCTCACCACCAAACCCCACCACAATTCCCACAGAATTTAGGAGACTGTAACAGCTTCCAAATTATGCAGCAACCCCCTCCGGACCCCCCAGTTTGTGCTGAAATTCATGAGATGAAGAAGAGAAAACCCATGGATGTTTCAGAGAGCAGCTCTGGAATTTCAACTTCTGAAACAGGGTTGTTCAACGCCAAAAATAGGTCAGGGAAAGGAAAGAGATTGAAAAGCATAGAGAAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTGCATGTCAGAGCTAGAAGAGGGCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGACGAGGCAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGCAGACCATGGGGATGGCAGTCATGTTGGATGAGATAATCAACTATGTCCAGTCTCTGCAGAATCAAGTAGAGTTCTTATCCATGAAATTAGCTGCAGCTAGCTCGTTCAACGACTTCAACTCGAAGGCCGACGCCCTATCGAAATTACAGGCAAGAGCACATGAAGCAAGAGAATTGGAGAGATTAATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA 789 45.12 MDPELQSFKPSFSFPDFTDPNFELMGHYSASNPVVLDNPSLNFTNLLPFSNDMFIPHHQTPPQFPQNLGDCNSFQIMQQPPPDPPVCAEIHEMKKRKPMDVSESSSGISTSETGLFNAKNRSGKGKRLKSIEKEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKQTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFNDFNSKADALSKLQARAHEARELERLMREGYGGVACFHSTLPL 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11301856 11303413 + Cp4.1LG04g13990.1 Cpe04g01400 468962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01400 262 CDD bHLH_AtBPE_like 142 224 - -
Cpe04g01400 262 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 261 IPR024097 GO:0006355
Cpe04g01400 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 202 IPR011598 GO:0046983
Cpe04g01400 262 Gene3D - 151 214 IPR036638 GO:0046983
Cpe04g01400 262 MobiDBLite consensus disorder prediction 102 118 - -
Cpe04g01400 262 Pfam Helix-loop-helix DNA-binding domain 155 203 IPR011598 GO:0046983
Cpe04g01400 262 PANTHER TRANSCRIPTION FACTOR BEE 1 6 261 - -
Cpe04g01400 262 SMART finulus 157 208 IPR011598 GO:0046983
Cpe04g01400 262 MobiDBLite consensus disorder prediction 97 157 - -
Cpe04g01400 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 216 IPR036638 GO:0046983
Cpe04g01400 262 MobiDBLite consensus disorder prediction 125 157 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01400 Cpe18g00762 CCT
Cpe04g01400 Cpe09g01137 CCT
Cpe04g01400 Cpe09g01137 ECH
Cpe04g01400 Cpe18g00762 ECH
Cpe04g01400 Cpe13g00466 CST
Cpe04g01400 Cpe20g00122 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01400 Cpe-Chr4:11301856 Cpe13g00466 Cpe-Chr13:4893153 1.75E-34 dispersed
Cpe13g00404 Cpe-Chr13:4415258 Cpe04g01400 Cpe-Chr4:11301856 1.65E-29 wgd
Cpe18g00762 Cpe-Chr18:7310238 Cpe04g01400 Cpe-Chr4:11301856 6.61E-91 wgd
Cpe20g00122 Cpe-Chr20:682246 Cpe04g01400 Cpe-Chr4:11301856 5.62E-63 wgd
Cpe04g01400 Cpe-Chr4:11301856 Cpe09g01137 Cpe-Chr9:9735254 5.13E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49426 PF00010 HLH 2.70E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01400 - - csv:101209353 281.952