Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01403 TGGGTTTTTTCTTTCTCTAATTGGATTCCGCTAGCTATTGCGGTGTGGGCGACTTTACAGTATGGGAGTTTCCAACGTCAGCTACTAGTAGAAGAATTGAACAAAAAATGGAAGCAAATTGTATTGGACACCTCTCCCACTACACCACTGGAGCATTGTGAATGGTTGAATAAGCTGTTGACCCAAATTTGGCCTAATCACATCAACCAAAAACTTTCATTGAAGTTCTCTACTATTGTTGAGAAACGATTAAAGCACCGGAGGTCAAGACTTATTGAAAGAGTAGAACTATTGGAGTTTTCTCTAGAAGTAAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCGTTGCCTGCAACAGAGCTACCTGGTGTATCTTCCTGGCTGGTTAAACTTCTAACGGACTTTATAGTAAGAACAATGGTCGAACCTCGACGCCGCTGTTTCCCCTTGCCAGCAGTCGACCTCGGTAAAAAGGCTGTGAGTGGTACAATATATGTGACAGTCATCTCAGCCACTAAGCTTTCCAGGAACAGCTTGAGAGGAAACTCTTCCAGAAAGTCACTGAGTACCTATATGAACAGTCCACCAGAAGAAACCTTAACTGATAAGGAAGACTTACAGACATTTGTGGAGGTAGAAATTGATGAGCTAAGTAGGAGAACTACAGTAAGATCAGGCTCCAGCCCTGTATGGAATTCAACATTCAATATGATCTTACATGAAGATACAGGAACTCTTCGGTTCAATCTTTATGAGTCTAACCCAAGCCATGTGAAGTATGACTATCTAGCCAGTTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCCACAACATTTTGGGCTATAGGATCTGACTCTGAAGTAATAGCAAAGCACTCTGAGTTTTGTGGAAAAGAGGTTCAAATGGTTGTCCCATTTGAAGGCATCGATTGTGGGGAGTTAACTCTGAGACTTATAGTTAAAGAGTGGCAATTTTCTGATGGTTCACATAGCTCGCATAATTTCCTTACATCTCAACAATCGGTTAATGGGTCCTCGAACTTTCGTACAAGAACTGGAAGGAAGATTGGCATTACCATTGTAGAAGGAAAAGATCTTAGTTTGAAGGATAAATCAGGGAAATGTGAGACATATGTAAAACTGGAATATGGGAAGGCTCTCCGGAAAACAAGAACTGCTATGTCTTTGAATCCTAATTGGAATCAAAAGTTTGAGTTTGATGAGATTGGAGGTGGTGAATACCTGAAGATCAAATGCTTTGGTGTGGATATATTCGGAGATGAAAATATGGGTACTGCACGAGTAAATCTGGAAGGAGTTCATGAAGGAATAGCCAGGGATGTATGGATCCCCCTAGAAAAAGTAAATTCTGGAGAACTAAGGCTTCTGATAGAGGCAGTCAAGTTGGATGACTATGAAGGATCGAGGGGTTCAAACACCATCTCCAGTAATGGTTGGATTGAACTTGGTATCATAGAAGCTAAAGACTTGGTTGCTGCTGATATTGGAGGAACAAGCGATCCTTATACCTTAGAGTTCCCTGATGATGGAAGTCCTTTGCTGTTGCATGTGAAAGACCACAACGCTTTACTACCCACATCGAGCATTGGCGACTGTGTTGTTGAGTATCAAAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTGAAAAGGGGGGAGATCCATATCCAAATCACAAGAAAAGTCCCTGATCTAGAGAAAGACAAAAGATGCAGTTTAGATTCCGAATCATCTTTTACCAAGGCACATCAAGTTTCAAGTCAGATGAAGCAAACAATCAGCAAGTTTCAGACTTTGATCGAGGATGTTAATCTCGACGAGGTTTCGGCGTGCTTGAGCGAACTAGAGAGCCTGGAGGAAGTGCAAGAGGAATACATACAACAGCTTGAAACAGAACAAAGGCTTCTGATAAATAAGATGAAGGAGCTTGGCCAGGAAATTCTTAATTCTTATTCACTTAGAGATGTTCTTGAGTGTTCTTCAGATACGTACATACATAGCTCTAACTCACTTCCACTGTCCTCTCACTCGCGTACGCTTCTCTCAAACCCGAATTTTTCTTTTCCGATTCCAAGAACATTTTCTTCTCTCAGAACTCCCACTGAGCATAGCGGCAAGAGAAACCCTAAAACCTCGCAGAAGTCTGGACCCTCTTCTTCTTCGTCTTGGGTTTCCAGGTGGCCTTCTGGGAGCTCTCGGAATGATCGGAAAGTTGAGAAGAAGGTAGCCGAAACGACACGAGATGATCGAACTGATCGAGCGAAGAATCAGACGGAGTACTTGGATAAGAACAAAGGGCAGAGTTCAATTGAGCGAATTGTTCTTCGCTTACGAAATTTAGGGATAGGATCAGATGATGAGGAGGAGAAGGAGGAGGATGAAGAGGATAATGAATTGGATTCTTTCGAGGCAATGCCGGTGACTGGGAAGGAAAAACTGGGGGATTTACTTCAACGTGAATGGATTCGACCGGATGGCACATTGGATTCGAATAAGGATGGGGAGGATGATATGGTTTTACCATGGGAGCGAGAGGAGGACAGGGAGGAAGAGGTGGAGGGTGGAAGCGGGTTGAAAAGGAGAAAGATGAAGGCTCCGACGTTAGCTGAATTGACAATTGAAGATGAGGAGCTGAGGCGGCTGAGGAGAATGGGGATGTTTATTAAAGAGCGGATTAATATACCGAAAGCGGGGATTACACAGGCAGTGCTGGAGAAGATTCATTTGAAATGGAGGAAGGAGGAGTTGGTGAGGCTTAAGTTCCATGAGGAGCTTGCACATGATATGAAGACAGCCCACGAGATTGTAGAGCGACGAACTGGAGGATTGGTTCTTTGGAGGTCTGGAAGTGTTATGGTAGTTTACCGTGGTAGTAATTATGAAGGGCCATCTAAAACTAAACCCCCTGCAACGGAGGGGGATGCGGTATTCATCCCAGATGTTTCTTCTGCTGCTACTTCGACAATGAGTGGCAATGTTGCCGTTTCAGCTCCAGAGAAGGCTAAGTTGCCTATTGGGGCTCCAAAGTCTAATGAGGCCGTGTCCGAGGAAGAGGCTGAATACAACCAACTAGTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTTCTTCCTATTGATGCTGATCAGCTTCCTCCTACTGTTCCCGGTTACAAAACACCGTTCAGGCTTCTCCCAACAGGAATGCGGTCCCGACTGACCAATGCAGAGATGACTCAAATGAGGAAACTTGCAAAATCCCTACCTTGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGCTTGGCAGTTGCTATACTTAAACTTTGGGAAAAGAGCCTAGTAGCTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAAGAACTTAACAGGAGGTGTGTTACTGTTGAGAAATAAATATTTTATCGTCATATACCGTGGAAAGGATTTTCTCCCAACAAGTGTAGCCACAGCTTTGGCAGAAAGGCAGGAATTAACAAAACACATTCAAGATGTGGAAGAGAAAACTCGAAGTAAAGTGGTCGAAGCAACTTCATCGAGCAATGATGGACAGGCACCTGCAGGTACTTTGGCTGAATTCTATGAGGCTCAGTCCCGATGGGGAAGGGAAATATCTGCAGAAGATCGTGAAAAAATGATTGAGGAAAGCTCCAGAGCAAAAACTGAAAGACTTATCAGACGAATCGAACATAAGCTTGGTGTTGCCCAAGCAAAGAAACTTAGAGCAGAAAAGTTGTTATCTAAAATTGAAGCGTCCATGATCCTCTCTAGCCCTGATGATGACCAAGAAACAATAACAGAAGAGGAACGGGTCATGTTTCGGAAGGTTGGGTTAAGAATGACCGCTTATTTACCTATAGGCATTCGTGGTGTCTTTGATGGTGTTGTTGAAAACATGCATTTACATTGGAAGCATAGGGAACTTGTGAAGTTAATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGAAACGGCAAGGTTGTTAGCGTATGAGAGTGGCGGAATACTAGTTTCGATAGATAGAGTTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATCGCCTTGAGGCCAAGAAACTTGCTTACAAAGGCAAAAGCATTAAAGCGTTCGGTGGCCATGCAGCGCCATGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAGAACATAGAGCAAATGAAGAAAGACATTGGCGTCAACGAAGATTCAGAGGACGAGAGGAACTGGTCATCTCAGGATGGACCTGTCTCAGAGTCTTTCCAAGATGAGGAAGCATCTTTGTCTGCATTTTCGGATGATGAGAATGACGAAGATGAAAATGACGAAGATAGCGAGTACGAAGAGGATGAAGATTTTGATTTTTCCGACTCAGAAGACACTGATGATCCAATTGGATGCGGA 4512 43.42 WVFSFSNWIPLAIAVWATLQYGSFQRQLLVEELNKKWKQIVLDTSPTTPLEHCEWLNKLLTQIWPNHINQKLSLKFSTIVEKRLKHRRSRLIERVELLEFSLEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDFIVRTMVEPRRRCFPLPAVDLGKKAVSGTIYVTVISATKLSRNSLRGNSSRKSLSTYMNSPPEETLTDKEDLQTFVEVEIDELSRRTTVRSGSSPVWNSTFNMILHEDTGTLRFNLYESNPSHVKYDYLASCEVKMKYAADDSTTFWAIGSDSEVIAKHSEFCGKEVQMVVPFEGIDCGELTLRLIVKEWQFSDGSHSSHNFLTSQQSVNGSSNFRTRTGRKIGITIVEGKDLSLKDKSGKCETYVKLEYGKALRKTRTAMSLNPNWNQKFEFDEIGGGEYLKIKCFGVDIFGDENMGTARVNLEGVHEGIARDVWIPLEKVNSGELRLLIEAVKLDDYEGSRGSNTISSNGWIELGIIEAKDLVAADIGGTSDPYTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPDLEKDKRCSLDSESSFTKAHQVSSQMKQTISKFQTLIEDVNLDEVSACLSELESLEEVQEEYIQQLETEQRLLINKMKELGQEILNSYSLRDVLECSSDTYIHSSNSLPLSSHSRTLLSNPNFSFPIPRTFSSLRTPTEHSGKRNPKTSQKSGPSSSSSWVSRWPSGSSRNDRKVEKKVAETTRDDRTDRAKNQTEYLDKNKGQSSIERIVLRLRNLGIGSDDEEEKEEDEEDNELDSFEAMPVTGKEKLGDLLQREWIRPDGTLDSNKDGEDDMVLPWEREEDREEEVEGGSGLKRRKMKAPTLAELTIEDEELRRLRRMGMFIKERINIPKAGITQAVLEKIHLKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPPATEGDAVFIPDVSSAATSTMSGNVAVSAPEKAKLPIGAPKSNEAVSEEEAEYNQLVDGLGPRFVEWWGTGVLPIDADQLPPTVPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYFIVIYRGKDFLPTSVATALAERQELTKHIQDVEEKTRSKVVEATSSSNDGQAPAGTLAEFYEAQSRWGREISAEDREKMIEESSRAKTERLIRRIEHKLGVAQAKKLRAEKLLSKIEASMILSSPDDDQETITEEERVMFRKVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLAYESGGILVSIDRVPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKDIGVNEDSEDERNWSSQDGPVSESFQDEEASLSAFSDDENDEDENDEDSEYEEDEDFDFSDSEDTDDPIGCG 1504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11314103 11323725 + Cp4.1LG04g14020.1 Cpe04g01403 468965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01403 1504 Gene3D - 1294 1394 IPR035920 -
Cpe04g01403 1504 Gene3D - 886 983 IPR035920 -
Cpe04g01403 1504 Gene3D - 1084 1179 IPR035920 -
Cpe04g01403 1504 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 678 1497 IPR045278 GO:0000375|GO:0003729
Cpe04g01403 1504 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 158 276 IPR035892 -
Cpe04g01403 1504 Gene3D C2 domain 163 301 IPR035892 -
Cpe04g01403 1504 MobiDBLite consensus disorder prediction 1464 1497 - -
Cpe04g01403 1504 Gene3D C2 domain 513 576 IPR035892 -
Cpe04g01403 1504 Gene3D C2 domain 341 474 IPR035892 -
Cpe04g01403 1504 Pfam CRS1 / YhbY (CRM) domain 889 971 IPR001890 GO:0003723
Cpe04g01403 1504 Pfam CRS1 / YhbY (CRM) domain 1296 1381 IPR001890 GO:0003723
Cpe04g01403 1504 Pfam CRS1 / YhbY (CRM) domain 1085 1169 IPR001890 GO:0003723
Cpe04g01403 1504 Pfam C2 domain 164 273 IPR000008 -
Cpe04g01403 1504 Pfam C2 domain 359 455 IPR000008 -
Cpe04g01403 1504 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 678 1497 - -
Cpe04g01403 1504 MobiDBLite consensus disorder prediction 725 746 - -
Cpe04g01403 1504 MobiDBLite consensus disorder prediction 707 781 - -
Cpe04g01403 1504 ProSiteProfiles CRM domain profile. 1083 1180 IPR001890 GO:0003723
Cpe04g01403 1504 Coils Coil 1413 1440 - -
Cpe04g01403 1504 CDD C2 361 455 - -
Cpe04g01403 1504 ProSiteProfiles CRM domain profile. 886 982 IPR001890 GO:0003723
Cpe04g01403 1504 SMART CRS1_YhbY_2 888 971 IPR001890 GO:0003723
Cpe04g01403 1504 SMART CRS1_YhbY_2 1085 1169 IPR001890 GO:0003723
Cpe04g01403 1504 SMART CRS1_YhbY_2 1295 1382 IPR001890 GO:0003723
Cpe04g01403 1504 SUPERFAMILY YhbY-like 887 980 IPR035920 -
Cpe04g01403 1504 ProSiteProfiles C2 domain profile. 147 284 IPR000008 -
Cpe04g01403 1504 Coils Coil 1178 1198 - -
Cpe04g01403 1504 MobiDBLite consensus disorder prediction 1449 1463 - -
Cpe04g01403 1504 SUPERFAMILY YhbY-like 1294 1392 IPR035920 -
Cpe04g01403 1504 Coils Coil 627 661 - -
Cpe04g01403 1504 MobiDBLite consensus disorder prediction 747 775 - -
Cpe04g01403 1504 SMART C2_3c 358 452 IPR000008 -
Cpe04g01403 1504 SMART C2_3c 165 284 IPR000008 -
Cpe04g01403 1504 MobiDBLite consensus disorder prediction 1435 1504 - -
Cpe04g01403 1504 ProSiteProfiles C2 domain profile. 339 453 IPR000008 -
Cpe04g01403 1504 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 488 574 IPR035892 -
Cpe04g01403 1504 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 358 468 IPR035892 -
Cpe04g01403 1504 SUPERFAMILY YhbY-like 1085 1176 IPR035920 -
Cpe04g01403 1504 ProSiteProfiles CRM domain profile. 1293 1393 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01403 - - - csv:101219948 1301.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01403 Cpe18g00760 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01403 Cpe-Chr4:11314103 Cpe18g00761 Cpe-Chr18:7295754 0 dispersed
Cpe01g02325 Cpe-Chr1:19564622 Cpe04g01403 Cpe-Chr4:11314103 2.33E-25 transposed
Cpe03g00545 Cpe-Chr3:3191652 Cpe04g01403 Cpe-Chr4:11314103 7.00E-152 transposed
Cpe03g01487 Cpe-Chr3:11754853 Cpe04g01403 Cpe-Chr4:11314103 3.69E-167 transposed
Cpe11g00407 Cpe-Chr11:2255447 Cpe04g01403 Cpe-Chr4:11314103 5.00E-24 transposed
Cpe11g01126 Cpe-Chr11:9352948 Cpe04g01403 Cpe-Chr4:11314103 2.58E-06 transposed
Cpe13g01143 Cpe-Chr13:9080201 Cpe04g01403 Cpe-Chr4:11314103 3.49E-131 transposed
Cpe15g00235 Cpe-Chr15:2131735 Cpe04g01403 Cpe-Chr4:11314103 1.29E-24 transposed
Cpe18g00760 Cpe-Chr18:7290899 Cpe04g01403 Cpe-Chr4:11314103 0 wgd
Cpe20g00121 Cpe-Chr20:671208 Cpe04g01403 Cpe-Chr4:11314103 1.48E-40 wgd
Cpe04g01403 Cpe-Chr4:11314103 Cpe09g01138 Cpe-Chr9:9741524 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016343 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01403 Cpe_Chr04 FPKM 0.233555 0.271178 0.095431 0.0 0.0 0.617227 0.384235 0.277611 0.289413 0.242504