Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01407 ATGGAAGTGGTCAAAGAAAGTTTCCCAGTGGTTAGCAAAAAACCAGAGAATCATCGAAACTGGAAAACTACCATTTTCTTGGAAAACCAGTTGCGGAAATCATTACAAAAACAAAACCCCCCCTTGTTTCTTTCTCCATCTACATTTCTTCCATTTTGCGCACAGATTCTTCTTCCTTATTCATCCATCCATCACGCCATGCGTATCAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAACGCCACCTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCGTTAATCTCATCAATGCCGGCCCCGATCACCTTCGCCCTGCGGTTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGCTCCGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTGTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGTCAGTTTCTTCTGAGACTGCGGCGTCGCACATGGGCCCACCGTTGAAGGACTGCGACATCCGCCACGTTTCGAAACAGCAAGGCGCCGCCCCCGATTCCGCGCTTCGGAAGATCAAAACACGACGGCGGTTCAAGCGATCAGCCCCCAACAAGCCGATGCCGGAGGAGGAGCCGGTGGTGGTAACCGAGTTCGTATTCGACGACCCGACCCGAGTTGTATCGGAGCCCCGGTGTTTGAAGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACTGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGGGCAGGGTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG 906 53.53 MEVVKESFPVVSKKPENHRNWKTTIFLENQLRKSLQKQNPPLFLSPSTFLPFCAQILLPYSSIHHAMRISCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAVFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAASHMGPPLKDCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPEEEPVVVTEFVFDDPTRVVSEPRCLKFELDSWVGHKSQEKDCSSDEAECLSVEGSAVGQGGDVELELSLGL 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11336629 11338242 + Cp4.1LG04g13950.1 Cpe04g01407 468969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01407 301 Pfam Lateral organ boundaries (LOB) domain 70 168 IPR004883 -
Cpe04g01407 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 67 282 - -
Cpe04g01407 301 ProSiteProfiles LOB domain profile. 69 175 IPR004883 -
Cpe04g01407 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 67 282 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01407 Cpe18g00757 CCT
Cpe04g01407 Cpe18g00757 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01431 Cpe-Chr2:12418418 Cpe04g01407 Cpe-Chr4:11336629 7.64E-86 dispersed
Cpe03g00701 Cpe-Chr3:4248445 Cpe04g01407 Cpe-Chr4:11336629 8.10E-87 dispersed
Cpe04g01407 Cpe-Chr4:11336629 Cpe19g00663 Cpe-Chr19:5304244 7.81E-50 dispersed
Cpe18g00757 Cpe-Chr18:7279054 Cpe04g01407 Cpe-Chr4:11336629 8.07E-137 wgd
Cpe04g01407 Cpe-Chr4:11336629 Cpe09g00304 Cpe-Chr9:1789293 1.21E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49428 PF03195 LOB 1.20E-22 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01407 - - csv:101219232 393.66