Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01407 | ATGGAAGTGGTCAAAGAAAGTTTCCCAGTGGTTAGCAAAAAACCAGAGAATCATCGAAACTGGAAAACTACCATTTTCTTGGAAAACCAGTTGCGGAAATCATTACAAAAACAAAACCCCCCCTTGTTTCTTTCTCCATCTACATTTCTTCCATTTTGCGCACAGATTCTTCTTCCTTATTCATCCATCCATCACGCCATGCGTATCAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAACGCCACCTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCGTTAATCTCATCAATGCCGGCCCCGATCACCTTCGCCCTGCGGTTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGCTCCGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTGTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGTCAGTTTCTTCTGAGACTGCGGCGTCGCACATGGGCCCACCGTTGAAGGACTGCGACATCCGCCACGTTTCGAAACAGCAAGGCGCCGCCCCCGATTCCGCGCTTCGGAAGATCAAAACACGACGGCGGTTCAAGCGATCAGCCCCCAACAAGCCGATGCCGGAGGAGGAGCCGGTGGTGGTAACCGAGTTCGTATTCGACGACCCGACCCGAGTTGTATCGGAGCCCCGGTGTTTGAAGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACTGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGGGCAGGGTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG | 906 | 53.53 | MEVVKESFPVVSKKPENHRNWKTTIFLENQLRKSLQKQNPPLFLSPSTFLPFCAQILLPYSSIHHAMRISCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAVFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAASHMGPPLKDCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPEEEPVVVTEFVFDDPTRVVSEPRCLKFELDSWVGHKSQEKDCSSDEAECLSVEGSAVGQGGDVELELSLGL | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11336629 | 11338242 | + | Cp4.1LG04g13950.1 | Cpe04g01407 | 468969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01407 | 301 | Pfam | Lateral organ boundaries (LOB) domain | 70 | 168 | IPR004883 | - | |
Cpe04g01407 | 301 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 67 | 282 | - | - | |
Cpe04g01407 | 301 | ProSiteProfiles | LOB domain profile. | 69 | 175 | IPR004883 | - | |
Cpe04g01407 | 301 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 67 | 282 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01407 | Cpe18g00757 | CCT | |
Cpe04g01407 | Cpe18g00757 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g01431 | Cpe-Chr2:12418418 | Cpe04g01407 | Cpe-Chr4:11336629 | 7.64E-86 | dispersed | |
Cpe03g00701 | Cpe-Chr3:4248445 | Cpe04g01407 | Cpe-Chr4:11336629 | 8.10E-87 | dispersed | |
Cpe04g01407 | Cpe-Chr4:11336629 | Cpe19g00663 | Cpe-Chr19:5304244 | 7.81E-50 | dispersed | |
Cpe18g00757 | Cpe-Chr18:7279054 | Cpe04g01407 | Cpe-Chr4:11336629 | 8.07E-137 | wgd | |
Cpe04g01407 | Cpe-Chr4:11336629 | Cpe09g00304 | Cpe-Chr9:1789293 | 1.21E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49428 | PF03195 | LOB | 1.20E-22 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01407 | - | - | csv:101219232 | 393.66 |