Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01410 ATGGCTATTAGTCTCAACACGAACAACAACAAACCCATTTTCTCCACTTTCCTCCGCATCGCAATCCTCAATTCCCTTCTTTTCTCCTCTTCTCTCGCCCGCGTTTTCACCCAAACCACCGCCGTCTTCGATGTCTCCGCTTCCTCCAACCGAGCTCAAAACGCCCTCTCCATAACCCCTCCTCAATTTCACTCCCATCGCCTTTCAAATTCCTCTCTGTCTCTGCCCCTGCACTCCCGACTCGCCATTCATAAGCATAATTACAAGGACTACGACAGCTTGGTCAGAGCTCGACTCGCCCGTGATGCAGCCCGTGTTCAATCCCTTAATCGGAATCTTAATCTAGCTTTGGCTCGTGATGCGGTCCGACCCAACTCCTTAACCGCCCCTGTTGTTTCTGGGCAGAGTCAGGGGAGTGGGGAGTATTTTGCACGGATTGCCGTTGGGCAGCCGGCTCAATCGTTCTATTTGGTGCCCGACACCGGCAGTGACATCACTTGGCTACAGTGCCTGCCCTGTAGTTATGGAAATACCTGTTACCAACAAACCGACCCGATATTCAACCCGACATCCTCGTCCTCTTACAGACCCCTGTCTTGCGATTCGCAGCAATGTCAATCCCTCGACAGACCCGGATGTCAATCCGGCACGTGTGCCTACCAAGTCAGGTACGGCGACGGTTCGTTCACCACCGGTGATTTCGCCACCGAGACGCTGACCTTCGGAAATTCGAAATCCATCCCCAATCTACCAATCGGCTGTGGCCACGACAATGAAGGCCTCTTCGTCGGAGCCGCCGGTTTGATCGGCCTCGGCGGTGGGGCTCTTTCCCTCTCCTCCCAACTTAAAGCGTCGTCGTTTTCCTACTGCCTCGTCGACCGCGACTCGGACTCGTCCTCCACTCTGGAGTTCGACTCGGCGCGACCCAGTGACTCGATCACTACCCCACTTCTGAAAAACAACCGAATCGACTCGTACCGGTACGTGCAGGTGACCGGAATGAGCGTAGGGGGGAAAGCGCTGTCGATTTCTTCGACGAGATTTGAAATCGACGGGTCGGGAATGGGGGGAATAATCGTTGACTCGGGGACGTTTATAACTCGGTTGCCGACTGACGTGTACGAATCGTTGAGAGAAGCGTTTGTGCAAGGGGCGCAGAGCCTGACAGCGGCGAGTGCGATATCACCGTTCGACACGTGTTACAATCTGGCAGGTCAGGCGAACGTGCAGGTGCCGACGGTGGCGTTTGAATTGTCGAAAGGGAAGTTGCTGCAGCTGCCGGCGAGAAACTACTTAATACGAATGGACACGGCGGGAACTTATTGCTTGGCGTTTCTCAAAACGACGTCGTCGCTTTCCATAATAGGGAGCTTCCAACAGCAGGGAATGCGTGTCAGCTATGACCTGGTCAACTCGCTGGTGGGATTCTCGTCTAATAAATGCTAA 1446 54.22 MAISLNTNNNKPIFSTFLRIAILNSLLFSSSLARVFTQTTAVFDVSASSNRAQNALSITPPQFHSHRLSNSSLSLPLHSRLAIHKHNYKDYDSLVRARLARDAARVQSLNRNLNLALARDAVRPNSLTAPVVSGQSQGSGEYFARIAVGQPAQSFYLVPDTGSDITWLQCLPCSYGNTCYQQTDPIFNPTSSSSYRPLSCDSQQCQSLDRPGCQSGTCAYQVRYGDGSFTTGDFATETLTFGNSKSIPNLPIGCGHDNEGLFVGAAGLIGLGGGALSLSSQLKASSFSYCLVDRDSDSSSTLEFDSARPSDSITTPLLKNNRIDSYRYVQVTGMSVGGKALSISSTRFEIDGSGMGGIIVDSGTFITRLPTDVYESLREAFVQGAQSLTAASAISPFDTCYNLAGQANVQVPTVAFELSKGKLLQLPARNYLIRMDTAGTYCLAFLKTTSSLSIIGSFQQQGMRVSYDLVNSLVGFSSNKC 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11351766 11353211 - Cp4.1LG04g14080.1 Cpe04g01410 468972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01410 481 Gene3D Acid Proteases 114 303 IPR021109 -
Cpe04g01410 481 SUPERFAMILY Acid proteases 135 481 IPR021109 -
Cpe04g01410 481 ProSiteProfiles Peptidase family A1 domain profile. 142 477 IPR033121 -
Cpe04g01410 481 Gene3D Acid Proteases 304 481 IPR021109 -
Cpe04g01410 481 PANTHER PROTEIN ASPARTIC PROTEASE IN GUARD CELL 1 23 481 - -
Cpe04g01410 481 Pfam Xylanase inhibitor C-terminal 328 477 IPR032799 -
Cpe04g01410 481 Pfam Xylanase inhibitor N-terminal 142 304 IPR032861 -
Cpe04g01410 481 PANTHER ASPARTYL PROTEASES 23 481 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01410 K22683 APF2; aspartyl protease family protein [EC:3.4.23.-] - csv:101218526 587.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01410 Cpe09g00282 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01410 Cpe-Chr4:11351766 Cpe09g00492 Cpe-Chr9:3252631 4.17E-100 dispersed
Cpe20g00111 Cpe-Chr20:615141 Cpe04g01410 Cpe-Chr4:11351766 2.83E-102 wgd
Cpe04g01410 Cpe-Chr4:11351766 Cpe09g00282 Cpe-Chr9:1674088 1.75E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011371 0 1 0 0 0 1 1 1 1 3 1 1 1 2 2 0 1 0 1 1 3 2 1 1 1 1 1 2 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01410 Cpe_Chr04 FPKM 6.136184 9.156752 33.521656 33.279694 60.466679 52.990997 68.578682 0.94723 0.517112 0.75309