Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01416 ATGACTTGGAGGAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATTTTTTTCCCACTTTGGGTGTTTCATGTCGTTGTTGCTCGGGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGCCATTGGGCACCCTGTCATGCCGTTGTCTCCACGCCTTTGCTTGTAACATTTGAGTTACTTCTTTGTATATACCTCGAGAGCCTGTCTGTTTATGGTTTTCCTGCTGTGAATTTGAAGATTGTCTTTCTACCGTTGCTGGCTTTTGAAATCATCATTTTAATCGATAATTTCAGAATGTGTAGATCACTAATGCCTGGTGACGATGAAAGCATGAGCGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTCGTTGCTGCTACAGTGTTTACTCTACTGAAGCTATGTGGGAGTGTTGGTGCTCTTGGCTGGTGGGACTTATTTATTAACTTTGGCATTGCGGAGTGCTTTGCGTTTCTCGTCTGTACAAAGTGGTCTAATCCTGTGATTCATAGAAATATTCAAACAAGAGAAACTTGTTCATCATCAGCCGTAGTTAGATATCTAGATTGGAACAACGGTCTGATGATTTATCCAGAGCAGGATCAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGCGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAGTCCTACTCTGCATGTATTTGGAGGGAACACCTGCGAGCGCGAAACATATACCACTTCCTGTCCTTTTCTCGCCCCTTTTTATACTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGATTGTTAGAGAAAGTTATACTTCTCTTAAGAGGTGGATCAGGCACCGCCCCCTATCTCAGTTTTTCTGCTAGGGCTCATGCCTTCTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTAGAGAGGAGCAGGCACGACTGTACCACGAGGGTGCCTCAGGGTACAATACGTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCCGAGGAGGTCTGGCGCCTTCAAGCTGCATTAGGGGAGCAAACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGGGAAATTAGCGTGGTTCTTCTTCCATGTAGGCATCGTGTACTATGCAGTACCTGCTGTGAGAAGTGTAAAAAGTGCCCAATTTGTCGTGTCTGTATCGAAGAACGATTGGCGGTATACGATGTTTAG 1404 44.73 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVSTPLLVTFELLLCIYLESLSVYGFPAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGSVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNIQTRETCSSSAVVRYLDWNNGLMIYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPASAKHIPLPVLFSPLFILQGAAVIYAASRLLEKVILLLRGGSGTAPYLSFSARAHAFLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSTCCEKCKKCPICRVCIEERLAVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11377967 11383545 - Cp4.1LG04g14250.1 Cpe04g01416 468978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01416 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Cpe04g01416 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Cpe04g01416 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Cpe04g01416 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
Cpe04g01416 467 SUPERFAMILY RING/U-box 411 461 - -
Cpe04g01416 467 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 467 - -
Cpe04g01416 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01416 Cpe18g00744 CCT
Cpe01g01761 Cpe04g01416 CCT
Cpe04g01416 Cpe18g00744 ECH
Cpe01g01761 Cpe04g01416 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01416 Cpe-Chr4:11377967 Cpe04g00106 Cpe-Chr4:952506 9.65E-09 dispersed
Cpe18g00744 Cpe-Chr18:7220515 Cpe04g01416 Cpe-Chr4:11377967 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01416 - - csv:101215825 903.279