Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01420 ATGGAATCGGACGAAGAAGATTTCGTTTTCTATGGAACGCCGATCGAGCGGGAGGAAGAGATCAACAGCCGTAAAAAGAAATCTGTGGCTGACGCTTCTGGTACCATGCGAAGCCTGCCTTCCTGGAAACAAGAGGTTAGAGACGAGGAAGGGCGTAGAAGATTTCATGGGGCATTCACAGGTGGATTTTCGGCTGGCCATTACAACACAGTTGGCTCAAAAGAAGGTTGGACTCCACAGTCATTCACGTCATCCCGAAAGAATAGAGCTGAAGTCAAGCAGCAAAACATTTTAAACTTCTTAGACGAAGATGAAAAAACTGAATTGGAAGGTCGAGGCCTGGGGACATCTTTCCAGTTTGATACATTTGGGTTCACAGCAGTAGAGCTTGCTCGCAAACAAGCTGAAAAGGAGCAACAGCAGAGGCCATCTGCAATTCCTGGACCTGTTCCTGATGAATTAGTTGTTCCAGCTGCAGAATCCATAGGTGTGAAGTTACTATTAAAGATGGGATGGCGCCATGGACGTGCAATAAAGGACTCAAGAGCTAATTCCCTCTATGATGCTCGAAGAGATGCTCGAAAAGCATTTCTAGCATTTTCTACAGGTGATACCAAATCAGAGATCCACAATTCTGAATCATTTCAGGATGATGATGGTGTTTCTCCTCAACCTGCCAAGGGTGATATTTCGTCTTCTCAGAGCACGCCAGTTTATGTGATCAACCCAAAACAGGATCTGCACGGTTTAGGTTTTGATCCTTTCAAGCATGCACCTGAGTTTAGGGAAAAGAAAAGAGCACGTGCGGCTGGGAAACAGGAAGGTTATGGAAAAGTTTTCTCCACGAAAAATAATCTTTTTGGCTTTAGGACTGAGAGGGTTGCTTCTGGCTTTGGCATTGGTGCACTTGAGGAACTTGATGTCGAAGATGAGGATGTCTATACCTCTGGTTATGAGTTTGAGGAAACATACGTACAAGAAGACGATGAACCACCTTCTAAATTGATTACAGATGGTAAACAAAAGTTGATTGAAAGAAAAGTAGATGGTGTATTGCCTGGGTTTAGAGTTCCATCGAACTCTGACTACCAGTTGGAGAGGTTTGATCCTCCAGTAATACCTAAGGATTTTATACCCCGCCACAAATTTGCGGGGCCTCTCAATGGTGGCTATAAGCTTGCTGATACCCCTCCCGTCGATGTTCCACCTCCTGATGATAATAATCTAAAACTTCTAATTGAAGGGGTAGCAACTTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAACAAGTCGAACACATTATTCAGTTTTCTTACTGGAGGAACTGGTCATGAGTATTATTCAAGGAAGCTATGGGAGGAGCAGATGAAGCGCATGGACCAACCTAAGCATCAATTTAATGATAAATATTCTCCAAGCGTGGAGAAGATGACAGCCGAAAGTCGTGGAAGAATCCTACATGAAAGGCCTTTGGCAAGAAGCTCTAAAGAGTTAAATCCACCTGCTGCTTCTGATGGCGTCCATGTCCAATACAATCTTTCAGATACATTTACTAAACCTACATCATCTGGTGGGATGTCAGAGGTCGTCAAACCTTTTGAGGATGATCCAGCAAAGCAAGAAAGATTTGAGCTTTTTTTAAAGGAAAAGTACCAAGGAGGCCTGCGCGCTGCTGCTCCAGTTGTAGCTGTTAACATGTCAGAAGCTGCTCGTGCACGTGAGCGCTTGGACTTCGAGGCTGCTGCAGAGGCAATTGAGAAAGGGAAAGGGAAAGGGTTGAAAGAAGCTAAGCTCTCTGCTGAGCACTTTGTGGATTTTTTAGCTACTGGAGGAATGCGGTTTACTTCTGGTGGTGTAGAGGAAGTGAAAGATCCGAAAGTAGAAGGTTTAGTCGTGGAGAAAATGATCCCAAAACGGGAAGAATATCAGTGGCGTCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGGAAGCCACCACCAGCTCCTAGGATGAGGAGCAAGTTGGATACACTTATTTTCACTTCAAATTCTGTCAAGTCGACAAAGGTCGAAGAACCTTTAACCTCAACCCTTACTCCATCACCTCAATCAAATGCTGAAGAAAAAGACGAAGATGCATCCGGAAATGTGAATGAAAAGGAAATAGAAGTTGAATGTGTTGATCGGCCCGTTGATCTCTATAAGGCTATTTTCTCTGATGAGTCTGAGGACGAAGAGAGTACATCAACTCTCAAGCAAGCCGAAGATCCTAAAAAGAAAGTTGAAGTGGCTAATACAACACTAAACCGTTTGATTGCGGGTGACTTTCTGGAATCTTTGGGTAAAGAACTTGGTCTGGAAGTGCCTCCAGATCTGCCTCCATCAAAGAAAGGCCAAACTGCAGCTCCTCAGACAGAAGTTGTGCCTATTGGTGAACAGAATACTGATATCCTTTCGACTGAAAACAAGACTTATCCCACCCCATCATCCACTGGGATTCCATCGGAACACAGAAAAACAGGCACCAAGGAACTTGGTCTAAGTGGCAGAAAAGAAGACAATGAAATCAATCATAACTCCGCTGGAAGTGATGGTAAATTTATGGAGACCAGTTCTTCCGGGAAAAATGCAAGTAAAGTTAATGAAGAAAAGATTTACAAGGAGGATAGAAAACATAACAGGCGAGCTGAGATTCATCGTGAATGTAGCAACAGCTCATCATCGGAAGATGAAAAGAGAAGAAAACGCTCAAGGAGGCGTAGGTATAAAAGTAGTGACTCAGATGATAGTGAGTCGAGTGATTATCATGCTAAAGAACACTCAAGATCAAGAAATAGAAAGAAAGGATCTTCTCAAGAAAATAAGAGCCGGAGAAAACACTCAAAACATCACAAGCACAGACATAGAGATTCTTCACCCAGAGATCATCATCGCTCTGGCAAAGATCGTACAGCATCTGAGAGAGAGAAACATAGATGGAGAGATTGA 3003 43.52 MESDEEDFVFYGTPIEREEEINSRKKKSVADASGTMRSLPSWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKTELEGRGLGTSFQFDTFGFTAVELARKQAEKEQQQRPSAIPGPVPDELVVPAAESIGVKLLLKMGWRHGRAIKDSRANSLYDARRDARKAFLAFSTGDTKSEIHNSESFQDDDGVSPQPAKGDISSSQSTPVYVINPKQDLHGLGFDPFKHAPEFREKKRARAAGKQEGYGKVFSTKNNLFGFRTERVASGFGIGALEELDVEDEDVYTSGYEFEETYVQEDDEPPSKLITDGKQKLIERKVDGVLPGFRVPSNSDYQLERFDPPVIPKDFIPRHKFAGPLNGGYKLADTPPVDVPPPDDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNTLFSFLTGGTGHEYYSRKLWEEQMKRMDQPKHQFNDKYSPSVEKMTAESRGRILHERPLARSSKELNPPAASDGVHVQYNLSDTFTKPTSSGGMSEVVKPFEDDPAKQERFELFLKEKYQGGLRAAAPVVAVNMSEAARARERLDFEAAAEAIEKGKGKGLKEAKLSAEHFVDFLATGGMRFTSGGVEEVKDPKVEGLVVEKMIPKREEYQWRPAPILCKRFDLIDPYMGKPPPAPRMRSKLDTLIFTSNSVKSTKVEEPLTSTLTPSPQSNAEEKDEDASGNVNEKEIEVECVDRPVDLYKAIFSDESEDEESTSTLKQAEDPKKKVEVANTTLNRLIAGDFLESLGKELGLEVPPDLPPSKKGQTAAPQTEVVPIGEQNTDILSTENKTYPTPSSTGIPSEHRKTGTKELGLSGRKEDNEINHNSAGSDGKFMETSSSGKNASKVNEEKIYKEDRKHNRRAEIHRECSNSSSSEDEKRRKRSRRRRYKSSDSDDSESSDYHAKEHSRSRNRKKGSSQENKSRRKHSKHHKHRHRDSSPRDHHRSGKDRTASEREKHRWRD 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11402890 11413537 - Cp4.1LG04g14270.1 Cpe04g01420 468982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 865 884 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 842 864 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 956 979 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 71 89 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 980 1000 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 21 89 - -
Cpe04g01420 1000 Gene3D Surp module 390 466 IPR035967 GO:0003723|GO:0006396
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 743 763 - -
Cpe04g01420 1000 ProSiteProfiles SURP motif repeat profile. 412 456 IPR000061 GO:0003723|GO:0006396
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 790 1000 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 803 841 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 694 709 - -
Cpe04g01420 1000 SUPERFAMILY Surp module (SWAP domain) 391 462 IPR035967 GO:0003723|GO:0006396
Cpe04g01420 1000 PANTHER BNACNNG56020D PROTEIN 1 801 - -
Cpe04g01420 1000 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 801 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 208 237 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 927 955 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 885 918 - -
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 694 722 - -
Cpe04g01420 1000 Pfam Protein of unknown function (DUF1604) 39 111 IPR011666 GO:0006397
Cpe04g01420 1000 SMART surpneu2 410 462 IPR000061 GO:0003723|GO:0006396
Cpe04g01420 1000 MobiDBLite consensus disorder prediction 42 56 - -
Cpe04g01420 1000 Pfam Surp module 412 459 IPR000061 GO:0003723|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01420 K13123 GPATCH1; G patch domain-containing protein 1 - csv:101222702 1587.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01420 Cpe-Chr4:11402890 Cpe17g00674 Cpe-Chr17:5424940 6.03E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g384 . . . . . . . . . . . . . . . . Cpe04g01420 Bhi02g00019 Tan09g1962 . . Hepe09g0315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01363 . Chy02g02393 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01420 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.397577 0.590989 0.300286 0.0 0.0 0.0