Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01421 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCCGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAATCTATCTCCTACCAACCAACCTTCTGAAGAATCTACCTTCCTTACCCCTGGTTTCTCAGCTACAGCCAGTAATGGCTCTGGAATCCTCATCCAGAAGGCACTTCCATTGGACAAGGAAGGTTAGTAATGAAGATGAAGACGATTCCACCTTCAAATCCTCAGAATCTGCCCCAGAAGAAAAGGAGGAGGAGAACGCCAAGCCCATTTCACAGGACTCACAACATCAGCAGCAGGTTGGAGCACAATTGTCAAGGAGGAAACTGCAACAGCTTGCCGTCTCTCGGTTCCGTTCGGTTCTCACTGCCCTTGGCCGCAGCCGGAACCAGCAGCTCGGTCTTCGTTCTCGAGTGGTCGGAACACTGTTTGGTTCTCGCCGAGGGCATGTTCATTTTGCATTCCAGAGAGACCCCAATTCTCATCCCGCTTTCTTGATTGAGCTTGCTACACCAATCAGTGGTCTGGTGAAGGAAATGGCATCTGGACTGGTTCGAATTGCACTGGAATGCGATAAAGAGAAAGAGGAGAACAAGAAACCAGGAAGGAGGCTGCTTGAAGAGCCTATTTGGAGGACATTTTGCAATGGGAAGAAATGCGGTTTTGCTTCAAGGCGAGAATGTGGACCTAAGGAGTGGAAGATCTTGAAGGCTGTGGAGCCAATTTCCATGGGTGCTGGCGTTTTACCGGTGAACGAAGGCACCGAGGGCGGTGGCGGGGAGGGAAAAGAGGGATCAGATGGTGAAATCATGTACATGAGAGCCAAGTTTGAGAGAATTGTAGGCTCTAGGGACTCTGAAGCTTTCTACATGATGAACCCAGATAGTAATGGTGCTCCTGAGCTCAGTGTCTATTTACTAAGGTTCCCATTTAAGAAGGAGGATCTTGGTTTTCGTCTCTCATTTTGGTGGACTGATGTTGGAGGAGTTAGAAGAGATGTGGCTGAAGACGGGGTCGATGAAGCGACCGCAGCCAAGGATTGCGCCTGT 1440 48.26 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQIYLLPTNLLKNLPSLPLVSQLQPVMALESSSRRHFHWTRKVSNEDEDDSTFKSSESAPEEKEEENAKPISQDSQHQQQVGAQLSRRKLQQLAVSRFRSVLTALGRSRNQQLGLRSRVVGTLFGSRRGHVHFAFQRDPNSHPAFLIELATPISGLVKEMASGLVRIALECDKEKEENKKPGRRLLEEPIWRTFCNGKKCGFASRRECGPKEWKILKAVEPISMGAGVLPVNEGTEGGGGEGKEGSDGEIMYMRAKFERIVGSRDSEAFYMMNPDSNGAPELSVYLLRFPFKKEDLGFRLSFWWTDVGGVRRDVAEDGVDEATAAKDCAC 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11414688 11423253 + Cp4.1LG04g14210.1 Cpe04g01421 468983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01421 480 MobiDBLite consensus disorder prediction 190 235 - -
Cpe04g01421 480 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 269 438 IPR006460 GO:0010274
Cpe04g01421 480 Pfam Protein of unknown function, DUF617 269 438 IPR006460 GO:0010274
Cpe04g01421 480 PANTHER PROTEIN MIZU-KUSSEI 1 180 438 IPR006460 GO:0010274
Cpe04g01421 480 MobiDBLite consensus disorder prediction 190 221 - -
Cpe04g01421 480 PANTHER BNAC07G49860D PROTEIN 180 438 - -
Cpe04g01421 480 SUPERFAMILY Histone-fold 12 141 IPR009072 GO:0046982
Cpe04g01421 480 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Cpe04g01421 480 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01421 - - - cpep:111793237 533.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01385 Cpe04g01421 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01421 Cpe-Chr4:11414688 Cpe20g00100 Cpe-Chr20:535949 8.00E-106 dispersed
Cpe01g01374 Cpe-Chr1:8260668 Cpe04g01421 Cpe-Chr4:11414688 2.91E-73 wgd
Cpe18g00736 Cpe-Chr18:7170002 Cpe04g01421 Cpe-Chr4:11414688 1.28E-149 wgd
Cpe04g01421 Cpe-Chr4:11414688 Cpe09g01149 Cpe-Chr9:9809668 1.83E-115 wgd
Cpe04g01421 Cpe-Chr4:11414688 Cpe09g00264 Cpe-Chr9:1540226 3.76E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g174 . . . . . . . . . . . . Car04g01610 . Sed06g1836 . Cpe01g01385 Bhi07g01403 Tan04g0931 Cmetu05g1710 . . . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 . . . . . . . . . . . . . . . . . . . . . . . . Cpe04g01421 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g01421 CCT 1 153 CCAAT-DR1 Transcription Factor Family AT5G08190 83.0 2.8e-64 241.9
Cpe04g01421 CCT 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 84.1 6.0e-67 250.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000518 5 3 5 6 5 3 4 3 3 3 3 3 6 3 3 6 3 4 6 2 3 3 3 4 3 3 3 6 3 2 112
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49431 PF04759 DUF617 2.30E-68 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01421 Cpe_Chr04 FPKM 10.775742 12.731324 11.993332 11.078083 22.363182 23.445274 21.13228 16.927536 16.650074 19.614958