Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g01423 | ATGGATGCTCGGCGAGGATCCCGCGTCGTCAAACCCAAAGTTCGTCAGGTCGGATTCTTCACCCTCGACGCTCCAAACCCCCCCGGACGCTCCCTATCCGGTCCGGTCGGCTTTGGTCCTTCTCAACAATCCCTATCTCCTCCCACCGATCCCTTGTCTCCGGTCATGATTCCTCCTCCTCGTCATCTCTCCGATAACCTTGCCTCACGCTCTACTATTCTTCCTGTTCCGACTCCGGCCAATTGGAGGAATTCTGGTGATCAGATTCATGTTGGCAGTTATAACCCTTCCCAGACCCTGCTTGCGACTTCTCCTTCGAGTAGAATTTGGGACGATGAGTTGGAGATGTCCGAGGATTCTTCCACCTCCGTTCCGTATCGCCGGAGTGGTTCTGGGAAGATTGCGTCGAGCCTTCCTGGCCTTGGAGTCCACATGGCGGCTAAGTCGTCTGAGAATTCGCAGGCGGTGCCTCTCAGGACGCTGGGACCTAATAAGCCTGCTGGAGTTGCAGAGTTGAACTTTGCTCAGTTTTATTGTTTGAGGGAGTTTGGAGAAGAAAATAGAAAGGATCATGAAGAAAAGAAAGGACAGGAAAATAATGGAGGGGCGCCCACAGAGGTGCAAAATCAACCACCGCCATCAAGTTCAAAATCCCTGAAGGCAAAAACAACGAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCAGCAAAAGTTTCTGCAAAAGGTGAGACGAATAAGTCAGGTACTGCCCCTGGTAAAGCTGTGAAGCAGCCTTCGGCTATGAAAGATAGCACTGCTGCACCTTCGGTTGCATCTACTGATAAAAGAGGAGGTGATCGTACACTTGATAAGGAAAGGAAGAAAGATGCGCCCCATCCACGAATGCAGTTTGATGATAAAAATAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTCGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATATGAGCAGGGAACTCAGCTTCCTGATCTTTTGTCGAAGTTTTTCCAACTTGACACCATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGCTGTATTGCAATGCTTCATGCCTTTCAACAGGCCATCAAAGACTACTCAACTCCGCCTCAGAAATCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTGTCTGTTAGCATGGGAAATGCAATTAGGCTAATAGCAAGTGGCCTAAAGTGTACCTACACTCATATAAATGCTATTTCTTATGTGATGCACGAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTGTCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCCTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGCTATTTCAAAGGTCCCAGGAAGGAAGGATGTTAATTATCTAGATAATTTAACTGCTAAAGAACAACTGCAATGTCTAAATTTAATGTATGATGCTACACCTTCAGATTATGTCTCAATGATTGTCACAGATTATGGCATGATCCCGCCTACAAGCATACCCGTGATCGTACGTGAGTATCGGAGAGAGCACCTATGGATTTAA | 1740 | 46.38 | MDARRGSRVVKPKVRQVGFFTLDAPNPPGRSLSGPVGFGPSQQSLSPPTDPLSPVMIPPPRHLSDNLASRSTILPVPTPANWRNSGDQIHVGSYNPSQTLLATSPSSRIWDDELEMSEDSSTSVPYRRSGSGKIASSLPGLGVHMAAKSSENSQAVPLRTLGPNKPAGVAELNFAQFYCLREFGEENRKDHEEKKGQENNGGAPTEVQNQPPPSSSKSLKAKTTKAERRALQEAQRAAKVSAKGETNKSGTAPGKAVKQPSAMKDSTAAPSVASTDKRGGDRTLDKERKKDAPHPRMQFDDKNRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLLSKFFQLDTIHPAIYKVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRLIASGLKCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDVNYLDNLTAKEQLQCLNLMYDATPSDYVSMIVTDYGMIPPTSIPVIVREYRREHLWI | 579 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 11427317 | 11432717 | - | Cp4.1LG04g14300.1 | Cpe04g01423 | 468985 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g01423 | 579 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 426 | 579 | - | - | |
| Cpe04g01423 | 579 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 1 | 429 | - | - | |
| Cpe04g01423 | 579 | MobiDBLite | consensus disorder prediction | 115 | 138 | - | - | |
| Cpe04g01423 | 579 | Pfam | Initiation factor 2 subunit family | 427 | 562 | IPR000649 | GO:0044237 | |
| Cpe04g01423 | 579 | PANTHER | NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN | 426 | 579 | - | - | |
| Cpe04g01423 | 579 | PANTHER | NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN | 1 | 429 | - | - | |
| Cpe04g01423 | 579 | MobiDBLite | consensus disorder prediction | 278 | 306 | - | - | |
| Cpe04g01423 | 579 | MobiDBLite | consensus disorder prediction | 20 | 66 | - | - | |
| Cpe04g01423 | 579 | MobiDBLite | consensus disorder prediction | 36 | 50 | - | - | |
| Cpe04g01423 | 579 | MobiDBLite | consensus disorder prediction | 201 | 220 | - | - | |
| Cpe04g01423 | 579 | MobiDBLite | consensus disorder prediction | 188 | 306 | - | - | |
| Cpe04g01423 | 579 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 349 | 572 | IPR037171 | - | |
| Cpe04g01423 | 579 | Gene3D | - | 402 | 572 | IPR042529 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g01423 | Cpe-Chr4:11427317 | Cpe17g00426 | Cpe-Chr17:3191706 | 5.27E-08 | dispersed | |
| Cpe04g01423 | Cpe-Chr4:11427317 | Cpe04g01424 | Cpe-Chr4:11433515 | 7.10E-92 | tandem | |
| Cpe18g00739 | Cpe-Chr18:7184511 | Cpe04g01423 | Cpe-Chr4:11427317 | 1.62E-98 | wgd | |
| Cpe18g00739 | Cpe-Chr18:7184511 | Cpe04g01423 | Cpe-Chr4:11427317 | 1.62E-98 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g01423 | K03680 | - | csv:101215104 | 645.58 |