Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01443 ATGCAGGGCATACACTCGATTGGTGGCGGAAGCCGCTTGTTTGGCGGCGGAGGAGGTGGCGGCGGGGACCGTAGCCTGAGGCCCCACCTCCACCACCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTACGCAACGTTCCTGTCGGTGGTGGCTGTCGGAAAACCAAACGAGCTTCCAAGTCCAAGCCGACATCTGACACAACCGGGCCACCACCTCCACTTCACGAACAGAAATCCACCTCTCATTCTAGCAGCGAGAGCTCTAGCCTCACCGCCGCAACAACAACCGCCGCCGCCGCAACCGAGGCTGTTTCCGCTCCATCTAAGAGTTCCGCGTCGACTCTATTAACCGTACAGGATTCGAAATTGTTCCCCAATCCTAGTACAAACACGAATTTCGAGATGGCGGCAGCCACAGTTTCGGACTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTTGGATTCGGCAACATCGCTGACGCGACGCCTTTCGCGATGAATCATCAGTTTCAAAATCAATGGACGCCACAGAGAATGATGAATGTTAACGACGAACTAAAGATGCAGGAAATCACAGGCGGCGGCAGCGGCGGCGGGTACATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGTAACATTGGATTTGGACCGTTGGATTGGCAGTCAAACGGAGATCATCAGGTTCTTTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCCAGACCCCCCCAATCTGTACCTTCCGTAA 942 53.08 MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSSSESSSLTAATTTAAAATEAVSAPSKSSASTLLTVQDSKLFPNPSTNTNFEMAAATVSDCGIFSEIGSFTSLITSSNETLPFGFGNIADATPFAMNHQFQNQWTPQRMMNVNDELKMQEITGGGSGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDPDPPNLYLP 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11530876 11531817 + Cp4.1LG04g14360.1 Cpe04g01443 469005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01443 313 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Cpe04g01443 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 301 IPR045174 GO:0003700|GO:0006355
Cpe04g01443 313 PANTHER DOF ZINC FINGER PROTEIN 4 17 301 - -
Cpe04g01443 313 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Cpe04g01443 313 MobiDBLite consensus disorder prediction 1 32 - -
Cpe04g01443 313 MobiDBLite consensus disorder prediction 85 132 - -
Cpe04g01443 313 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Cpe04g01443 313 MobiDBLite consensus disorder prediction 108 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01443 - - - cmax:111469312 556.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01443 Cpe18g00719 CCT
Cpe04g01443 Cpe20g00241 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01443 Cpe-Chr4:11530876 Cpe10g00531 Cpe-Chr10:3110980 1.50E-33 dispersed
Cpe11g00175 Cpe-Chr11:950734 Cpe04g01443 Cpe-Chr4:11530876 5.73E-32 dispersed
Cpe20g00441 Cpe-Chr20:2531534 Cpe04g01443 Cpe-Chr4:11530876 3.06E-30 dispersed
Cpe18g00719 Cpe-Chr18:7070461 Cpe04g01443 Cpe-Chr4:11530876 2.32E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g423 . Blo16g00241 . Bda15g00634 Bpe12g00514 . Bma06g00234 Bma12g01019 Cmo13g00918 . Cma10g00281 Cma11g00228 Car10g00264 Car11g00205 Sed08g0300 Cpe20g00241 Cpe04g01443 Bhi02g00056 Tan09g2004 Cmetu02g1182 . Hepe09g0293 . . Cla06g01522 Cam06g1679 Cec06g1740 Cco06g1737 Clacu06g1644 Cmu06g1592 Cre06g2403 Cone2ag0789 . Cone13ag0023 Cone19ag0032 Lsi02g00370 Csa01g00849 . Cme12g01696 Blo13g00035 . Bda11g01633 . . Bpe15g00563 Bma03g00870 Bma08g00252 . Cmo10g00299 Cmo11g00231 Cma13g00889 . Car13g00729 Car18g00159 . Cpe18g00719 . . . . . . . . . . . . . . Lsi06g01388 Csa01g00332 Chy02g02411 Cme02g01804
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 3.2e-45 178.7
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.6e-39 159.1
Cpe10g00145 CCT,CST 21 158 C2C2-Dof Transcription Factor Family AT1G29160 54.9 1.1e-37 153.7
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 1.8e-45 179.5
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT2G34140 50.9 8.1e-38 154.1
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT2G37590 67.4 8.9e-41 164.9
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.4
Cpe02g01240 . 57 131 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 59.6 1.7e-36 150.6
Cpe20g00813 CST 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Cpe04g01497 CCT,CST,ECH 143 489 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.2e-83 307.8
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT5G02460 66.7 5.9e-39 159.1
Cpe20g00813 CST 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Cpe02g01240 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 61.2 8.5e-38 155.2
Cpe10g00881 CCT,CST,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 63.9 2.7e-36 150.2
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.7e-36 150.2
Cpe10g00881 CCT,CST,ECH 19 128 C2C2-Dof Transcription Factor Family AT3G55370 65.5 1.1e-36 151.4
Cpe04g01443 CCT,CST 26 313 C2C2-Dof Transcription Factor Family AT5G60850 52.3 1.4e-48 190.7
Cpe18g00719 CCT 26 318 C2C2-Dof Transcription Factor Family AT5G60850 53.7 2.0e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004522 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49433 PF02701 zf-Dof 3.80E-33 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01443 Cpe_Chr04 FPKM 20.101912 22.411461 26.348152 26.386177 20.778862 19.0854 19.993534 43.575245 41.821419 41.104271