Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01443 ATGCAGGGCATACACTCGATTGGTGGCGGAAGCCGCTTGTTTGGCGGCGGAGGAGGTGGCGGCGGGGACCGTAGCCTGAGGCCCCACCTCCACCACCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTACGCAACGTTCCTGTCGGTGGTGGCTGTCGGAAAACCAAACGAGCTTCCAAGTCCAAGCCGACATCTGACACAACCGGGCCACCACCTCCACTTCACGAACAGAAATCCACCTCTCATTCTAGCAGCGAGAGCTCTAGCCTCACCGCCGCAACAACAACCGCCGCCGCCGCAACCGAGGCTGTTTCCGCTCCATCTAAGAGTTCCGCGTCGACTCTATTAACCGTACAGGATTCGAAATTGTTCCCCAATCCTAGTACAAACACGAATTTCGAGATGGCGGCAGCCACAGTTTCGGACTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTTGGATTCGGCAACATCGCTGACGCGACGCCTTTCGCGATGAATCATCAGTTTCAAAATCAATGGACGCCACAGAGAATGATGAATGTTAACGACGAACTAAAGATGCAGGAAATCACAGGCGGCGGCAGCGGCGGCGGGTACATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGTAACATTGGATTTGGACCGTTGGATTGGCAGTCAAACGGAGATCATCAGGTTCTTTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCCAGACCCCCCCAATCTGTACCTTCCGTAA 942 53.08 MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSSSESSSLTAATTTAAAATEAVSAPSKSSASTLLTVQDSKLFPNPSTNTNFEMAAATVSDCGIFSEIGSFTSLITSSNETLPFGFGNIADATPFAMNHQFQNQWTPQRMMNVNDELKMQEITGGGSGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDPDPPNLYLP 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11530876 11531817 + Cp4.1LG04g14360.1 Cpe04g01443 469005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01443 313 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Cpe04g01443 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 301 IPR045174 GO:0003700|GO:0006355
Cpe04g01443 313 PANTHER DOF ZINC FINGER PROTEIN 4 17 301 - -
Cpe04g01443 313 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Cpe04g01443 313 MobiDBLite consensus disorder prediction 1 32 - -
Cpe04g01443 313 MobiDBLite consensus disorder prediction 85 132 - -
Cpe04g01443 313 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Cpe04g01443 313 MobiDBLite consensus disorder prediction 108 132 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01443 Cpe18g00719 CCT
Cpe04g01443 Cpe20g00241 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01443 Cpe-Chr4:11530876 Cpe10g00531 Cpe-Chr10:3110980 1.50E-33 dispersed
Cpe11g00175 Cpe-Chr11:950734 Cpe04g01443 Cpe-Chr4:11530876 5.73E-32 dispersed
Cpe20g00441 Cpe-Chr20:2531534 Cpe04g01443 Cpe-Chr4:11530876 3.06E-30 dispersed
Cpe18g00719 Cpe-Chr18:7070461 Cpe04g01443 Cpe-Chr4:11530876 2.32E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49433 PF02701 zf-Dof 3.80E-33 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01443 - - cmax:111469312 556.984