Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01445 ATGGAGGAGAGTGAGAGTGAAATCCGAATCAAAACCCTAACCGGAGAATCACTGACCATCTCCATTTCCGGCAACAGAACAATTGAGGACCTTAAACTTCTACTCAGGAAGAATTTCCCCTCTGCCACCGTTTCCCCCAATTTTCACCTCTTTTCTAAGGCAATGAACGGTACTAAGTTGAAACCGCAGAGTGAAATTAGTGCATGCCGCATTGACAAAGGCGAATTTCTAGTGCTCATTCCATTTACTAAAAAGGAATCTTCCAAGCCCCAACTTCGCGATCAATATGTACAAGGATCCAGTGTTTCGGGCGGAAGCTCAATTTCTCAATTCGCTGATTCTGCATGGTCCGATATGGTGCAGGATTTATCGTATTTACATGACTGTTCTGTTCAAGGGAGAGAGGGAAATGGCCTCGAGAGTGAGAGAGGGAATTTTGAAACTGGAGGTGTTGATGCTGAATTGGCAGCGACATGTAGTACCGGTTCTTCTAGTTTGAAAGCAAAAGGGAAAAAGGGTTTCGTTTGTAATGACTCGAATGGGATTTTAGATGACATTTTGAGGAACTTGTTATCGTCTCCTACTGTGGCATTTTTAAGCGAATACAATTGTGAAAACTTGATTAAGTTTTTGGAGTCTGTGGATTGTTTATCAGACCCACGTAATGAGAAGTGCTTGTTGGCAAAGCAAGCTAATTCCCGAAGTGGCAACAGAAAAGCGCCAAATAGAACACATTGTTCTTCATGCCTATGTCCAGTGTGGCTGAAGAAGATAATGAAGGCATTTGCTTTCTTAAATGTTCTATCAATGTTTGCTCAACTACGAGAAGAAATTATAACTGCAAGTCGGTTGGAACAAGCAATGGACCTGCTGCAGAAACATGGAATTACGCTTCGTATGGAGGATATGAAGCATCTCTCTCTTCTCTGTCCCAAGGTAGTACATTTTGCAAGTGGCACTTTGGAAGATAGCTATGATGATAAGATTATCATTGTTATTTATTTGACCGCACAAAATAGTCGATGGACAGCTGATAATACGGCATATAAACTGTCCAAAGCACCAACAGATATCACTCCATTGAAGAGGCGGGAAAAATCATTTAAATTTCACCTTTGGGATGCTATTAAAGGCCATATGCTTAGACATGGAAGCAGAAGTGAGATATGTGTGTCTTTTTCTTTGGAAGATTTAATTACGTCAAAAGCGTCTGCTGTGGATGGAAATGAAGCGAAGCGAGCAAAAAAAAGTGACATGGCTTCGTCGAGTTCCAAATCTGACCGAGTACAATGTCATGACACTTCGAAACTCTTACCTGAGAATATGGTTGAACATCTTGAAAAGGGTATTGGATCTGAGGGCCAGATAGTGCACGTCGAAGATATTGCGGCTAGAAAAGCTAATTATGTGGAAATTCCGGAGGAACTTTCTAATAATGTTATATCAGCACTTAAATGTATTGGAGTAGCAAAGTTGTATAGCCATCAGACAAGGTCGATAGAAGCCTCCCTGGCTGGAAATCATGTTGCAGTTGCTACAATGACATCAAGTGGAAAATCTCTGTGCTATAACTTGCCAGTTCTTGAATCAATGTCTCAAGATGTCTCATCATGTGCTCTTTACTTATTTCCAACTAAGGCCTTAGCTCAAGATCAACTCAGAAGTTTGCTTGTCATGATGAAAGGGTTTAATGCTGACCTTAACATTGGCGTTTATGATGGTGATACCTCACAGTCTGACCGGATTTTATTGCGTGATAATGCTAGGCTGTTAATCACAAATCCTGATATGCTACATCTATCAATCCTGCCACAGCACAGACAATTTAGTCGGATATTATCAAATCTGCGGTTTATAGTCATTGATGAGGCTCATACTTATAAGGGAGCATTTGGATGTCATACTGCACTAATAATGCGGAGACTTCGCAGGCTTTGCTCTCATGGTGTGGATTACCACCTAGAACTTGGAAGTCTGTCAAGCTTAGAGCTGATTGAAAATGATGGAAGTCCTTCTGCCAGAAAACTATTCATCCTCTGGAATCCTATTATGGCCTCAAAAAGTTCTCAGAGAGGTATTGATTCTCTGCAGAGTACAGAAAAGAATGCTAATTTCAGAAATCCAAGGCAACAACTTTCCATCCCAATTGTGGACATTGCGAGGCTCTTTGCGGAGATGGTTCAGCATGGACTTCGCTGCATTGCTTTTTGTAAAACTCGTAAACTTTGTGAACTCGTTTTATGCTACACGCGCGAAATTCTTAAGGAGAGAGCACCCCATCTGGTTCAGTCTGTGTGTGCTTATCGTGCTGGATACACTGCTGAGGATAGGAGGAGAATAGAGAGTGACTTTTTTGGGGGAAACCTTTGTGGTGTTGCTGCGACAAATGCCCTTGAATTGGGTATTGATGTAGGCCACATTGATGCAACTCTGCATTTGGGCTTTCCTGGTAGTATTGCTAGCTTGTGGCAACAAGCAGGCAGGGCAGGAAGGAGAGAAAAGACTTCTCTTTCTGTATATGTTGCATTTGAAGGGCCTCTTGATCAATATTTCATGAAACACCCTGAAAAACTTTTTGGGAGCCCAATTGAGTGCTGCCATATTGATGCTGAAAACCAACAGGTTCTTGAACAGCATTTGTTGTGTGCTGCATATGAACACCCAGTTTGTATGGTTTATGATCAGAATTTGTTTGGTCCTGGCTTAAACACTGCCCTAGTGTCTCTAAAAAGTAGAGGAGATTTGATTCCTGCACCATCATGTGGTTCATCCAAAAGTATTTGGACTTATATTGGGAAAGAGAAAATTCCTTCACGCTCAGTTAGTATCCGAGCGATTGAAGCAGAGAGATACAAAGTTGTAGATCAGCACCGAAATGAAGTTCTCGAAGAGATTGAGGAAAGCACGGCTTTCTTTCAGGTTTCCGGCTATGTGGTTCAGGTTTATGAAGGTGCTGTTTATATGCATCAAGGACGAACTTATCTGATCAAAAGCTTGAATTTGTCAACTATGCTTGCTTTCTGTGAAGAAGCTGATCTAAAATATTACACAAAAACACGTGATTACACTGACATTCATGTTATTGGTGGTAGTTTGGCCTATCCAAGGAGAGCTCCAAATATTCCGCTCTTAAAAACAACTGCGCAAGCAAATGATTGCAGAGTTACCTCCACTTGGTTTGGTTTCTATCGAATATGGAAAGGAAGTAATCAAATTTTTGACACAGTGGACCTCTCCCTTCCAAAATATTCGTATAACTCTCAGGCAGTTTGGATTCCAGTACCACTATCTATAAAAGAAGAGGTGAAGAGGAAAAACTATGACTTTCGTGCAGGCTTGCATGCTGCTTCGCATGCTCTTCTGAATGTAGTACCATTACGTATAATTTGCAACATGTCTGACTTGGCTCCTGAATGTGCAAATCCTCATGATTCTCGCTATTTTCCAGAAAGGATTCTGTTGTATGATCAACATCCTGGAGGAACTGGTATGTCACTTCAGATTCAACCCGTTTTCATAGAGCTGTTGCATGCTGCTTTAGAACTTCTCACCTCTTGCTGCTGCTTCGGAGAGACCGGCTGCCCTAATTGTGTTCAAAGTCTGGCCTGTCACGAATACAACGAGGTTTTACACAAGGATGCAGCCAGTTTAATTATCAAGGGTGTTCTGGATGCAGAGAAAACATATTACAGTCAGTTTGACCCCATAGTGCCGAAGATTGATATCCATTCTTCTTTTTTTCATCAGATTATGAAGTACTTGCATGTGATTTCGATGAGACTTGCGAACTGTGATTCACAGGTAGATCGGCTCTTTCGCACAAATCAGAGAACTATTGTATCACATCTACCAATTATATGTGCTGACGGCTCAAACAATTCATTACTTAGGCTTGACTGA 3900 41.38 MEESESEIRIKTLTGESLTISISGNRTIEDLKLLLRKNFPSATVSPNFHLFSKAMNGTKLKPQSEISACRIDKGEFLVLIPFTKKESSKPQLRDQYVQGSSVSGGSSISQFADSAWSDMVQDLSYLHDCSVQGREGNGLESERGNFETGGVDAELAATCSTGSSSLKAKGKKGFVCNDSNGILDDILRNLLSSPTVAFLSEYNCENLIKFLESVDCLSDPRNEKCLLAKQANSRSGNRKAPNRTHCSSCLCPVWLKKIMKAFAFLNVLSMFAQLREEIITASRLEQAMDLLQKHGITLRMEDMKHLSLLCPKVVHFASGTLEDSYDDKIIIVIYLTAQNSRWTADNTAYKLSKAPTDITPLKRREKSFKFHLWDAIKGHMLRHGSRSEICVSFSLEDLITSKASAVDGNEAKRAKKSDMASSSSKSDRVQCHDTSKLLPENMVEHLEKGIGSEGQIVHVEDIAARKANYVEIPEELSNNVISALKCIGVAKLYSHQTRSIEASLAGNHVAVATMTSSGKSLCYNLPVLESMSQDVSSCALYLFPTKALAQDQLRSLLVMMKGFNADLNIGVYDGDTSQSDRILLRDNARLLITNPDMLHLSILPQHRQFSRILSNLRFIVIDEAHTYKGAFGCHTALIMRRLRRLCSHGVDYHLELGSLSSLELIENDGSPSARKLFILWNPIMASKSSQRGIDSLQSTEKNANFRNPRQQLSIPIVDIARLFAEMVQHGLRCIAFCKTRKLCELVLCYTREILKERAPHLVQSVCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGIDVGHIDATLHLGFPGSIASLWQQAGRAGRREKTSLSVYVAFEGPLDQYFMKHPEKLFGSPIECCHIDAENQQVLEQHLLCAAYEHPVCMVYDQNLFGPGLNTALVSLKSRGDLIPAPSCGSSKSIWTYIGKEKIPSRSVSIRAIEAERYKVVDQHRNEVLEEIEESTAFFQVSGYVVQVYEGAVYMHQGRTYLIKSLNLSTMLAFCEEADLKYYTKTRDYTDIHVIGGSLAYPRRAPNIPLLKTTAQANDCRVTSTWFGFYRIWKGSNQIFDTVDLSLPKYSYNSQAVWIPVPLSIKEEVKRKNYDFRAGLHAASHALLNVVPLRIICNMSDLAPECANPHDSRYFPERILLYDQHPGGTGMSLQIQPVFIELLHAALELLTSCCCFGETGCPNCVQSLACHEYNEVLHKDAASLIIKGVLDAEKTYYSQFDPIVPKIDIHSSFFHQIMKYLHVISMRLANCDSQVDRLFRTNQRTIVSHLPIICADGSNNSLLRLD 1299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11538298 11549765 + Cp4.1LG04g14390.1 Cpe04g01445 469007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01445 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 874 IPR001650 -
Cpe04g01445 1299 ProSiteProfiles Ubiquitin domain profile. 6 80 IPR000626 GO:0005515
Cpe04g01445 1299 Gene3D - 706 879 IPR027417 -
Cpe04g01445 1299 Gene3D - 7 97 - -
Cpe04g01445 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 500 656 IPR014001 -
Cpe04g01445 1299 MobiDBLite consensus disorder prediction 409 430 - -
Cpe04g01445 1299 Pfam DEAD/DEAH box helicase 494 647 IPR011545 GO:0003676|GO:0005524
Cpe04g01445 1299 Pfam Helicase conserved C-terminal domain 725 832 IPR001650 -
Cpe04g01445 1299 SUPERFAMILY Ubiquitin-like 3 81 IPR029071 -
Cpe04g01445 1299 CDD DEXHc_Hrq1-like 492 649 - -
Cpe04g01445 1299 Gene3D - 462 675 IPR027417 -
Cpe04g01445 1299 PANTHER ATP-DEPENDENT HELICASE HRQ1 19 1230 - -
Cpe04g01445 1299 Pfam MrfA Zn-binding domain 1116 1198 IPR018973 -
Cpe04g01445 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 852 IPR027417 -
Cpe04g01445 1299 CDD Ubl_ubiquitin_like 8 80 - -
Cpe04g01445 1299 SMART ultradead3 488 665 IPR014001 -
Cpe04g01445 1299 SMART helicmild6 752 833 IPR001650 -
Cpe04g01445 1299 CDD SF2_C_Hrq 715 842 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01445 - - - bhj:120070581 1990.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01445 Cpe-Chr4:11538298 Cpe07g00895 Cpe-Chr7:8020353 1.02E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01445 Cpe_Chr04 FPKM 72.087181 71.593094 67.053947 67.004524 28.435509 29.599421 28.475716 32.015095 29.588278 30.032015