Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01448 ATGGAAGTTAATACCTACAGTGATCTATCACACAAAATTCTTTTTCAAATGGAATGCTGCTCGGCTCGACAGAAAAGAGTTGTACTCTTAGCACTTCTGATCTTTACAGCGTTCTATTCAACTGGGGCTTATGATCCATTGGATCCGAATGGAAACATAACAATCAAATGGGATGTAGTTTCTTGGACGCCAGATGGATATGTTGCTGTAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATGCACCAGGATGGACCCTGGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCTATGGTGGGAGCTCAGACGACAGAGCAAGGAGATTGTTCCAAGTTCAAAGGAAACGTACCTCATTGCTGCAAGAAAACCCCAATAGTTGTTGATTTGCTCCCTGGTGTTCCTTACAATCAGCAATTCTCCAATTGCTGCAAGGGTGGAGTGTTGGCTTCTTGGGGACAGGACCCAGTAGGTTCAGTCTCTGCCTTTCAGGTGAGTGTTGGACTAGCTGGCACTTCGAACAAAACGGTAAAGTTGCCGAAGAACTTCACTCTGCTCGGTCCAGGACCAGGCTACACATGTGGACCTGCAAAAGTTGTGCCTTCTACAGTCTTCCTTACTCCTGATCGCCGGCGGAAAACTCAAGCATTGATGACATGGAATGTAACCTGCACTTACTCACAGTTTCTGGCCTCTAAGAACCCAACTTGCTGCGTATCACTCTCGACTTTCTACAATGATACGATCACTTCTTGCCCAACCTGTGCATGTGGCTGCCAGAACAAACACAATTGTATAAAGAGTAACTCAAAGCTATTGCACAAGGACGGAATAAATACTCCTAAAAAGGATAATACGCCTTTACTACAGTGCACCCATCACATGTGTCCTGTTCGAGTACACTGGCACGTAAAAATTAATTACAAGGATTACTGGCGTGTGAAGGTTGCTGTAACCAACTTCAACTACAGGATGAACTATACGCTATGGACACTGGCAGTGCAGCATCCAAATCTGAATAATGTAACTCAAGTGTTCAGTTTTGACTACAAGCCCCTAGTTCCCTATGAATCCATTAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTACAATCTGAAGTACTAATGAAGAAGGATAAGGATACATTTACCTTCAAGCAGGGTTGGGCCTTTCCTAGAAAAGTATACTTCAACGGCGACGAATGTCAGATGCCACCACCAGAATCATACCCATATCTACCCAACTCTGCTCCTGAAGGCTCCAGTGCAGTTACCAAGTTGATCACCTCCTTGCTTTTGATAATCTGGCTTTTGTGGTGA 1371 43.91 MEVNTYSDLSHKILFQMECCSARQKRVVLLALLIFTAFYSTGAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMNNFQMYRHINAPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPIVVDLLPGVPYNQQFSNCCKGGVLASWGQDPVGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSNSKLLHKDGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPYLPNSAPEGSSAVTKLITSLLLIIWLLW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11568796 11572373 + Cp4.1LG04g14420.1 Cpe04g01448 469010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01448 456 PANTHER PROTEIN COBRA 27 453 IPR006918 GO:0010215|GO:0031225
Cpe04g01448 456 PANTHER COBRA-LIKE PROTEIN 27 453 - -
Cpe04g01448 456 PIRSF COBRA 10 456 IPR006918 GO:0010215|GO:0031225
Cpe04g01448 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01448 - - - cmo:103494059 915.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01448 Cpe18g00714 CCT
Cpe04g01448 Cpe18g00714 ECH
Cpe04g01448 Cpe20g00086 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01399 Cpe-Chr2:12223631 Cpe04g01448 Cpe-Chr4:11568796 0 dispersed
Cpe04g01448 Cpe-Chr4:11568796 Cpe18g00714 Cpe-Chr18:7039262 1.29E-49 dispersed
Cpe04g01448 Cpe-Chr4:11568796 Cpe04g01449 Cpe-Chr4:11570360 0 tandem
Cpe18g00713 Cpe-Chr18:7036903 Cpe04g01448 Cpe-Chr4:11568796 0 wgd
Cpe20g00086 Cpe-Chr20:461896 Cpe04g01448 Cpe-Chr4:11568796 7.04E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g445 . . Bda06g00512 Bda15g00631 . . . Bma12g00957 . . Cma10g00288 Cma11g00220 Car10g00270 Car11g00198 Sed08g0289 Cpe20g00086 Cpe04g01448 Bhi02g00080 Tan09g2022 Cmetu02g1379 . Hepe09g0286 . . Cla06g01530 Cam06g1687 Cec06g1749 Cco06g1747 Clacu06g1654 Cmu06g1601 Cre06g2413 . . . . Lsi02g00135 Csa01g00618 . . . . . . Bpe07g00746 . . Bma08g00250 . Cmo10g00306 Cmo11g00223 . . . . . Cpe18g00714 . . . . . . . . . . . . . . Lsi06g01401 Csa01g00340 Chy02g02402 Cme02g01812
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g01449 CCT,ECH 48 447 COBRA Gene Family AT5G60920 80.8 1.1e-210 729.6
Cpe18g00713 CCT,ECH 44 439 COBRA Gene Family AT5G60920 78.8 1.2e-201 699.5
Cpe03g00975 CCT 118 526 COBRA Gene Family AT5G60920 74.8 1.3e-198 689.5
Cpe02g01400 . 44 448 COBRA Gene Family AT5G60920 74.3 1.6e-193 672.5
Cpe04g01448 CCT,CST,ECH 55 450 COBRA Gene Family AT5G60920 68.0 1.6e-177 619.4
Cpe02g01399 CCT 1 391 COBRA Gene Family AT5G60920 69.1 3.6e-177 618.2
Cpe01g00487 . 54 452 COBRA Gene Family AT5G60920 53.8 6.7e-131 464.5
Cpe04g01449 CCT,ECH 18 452 COBRA Gene Family AT3G02210 72.5 1.9e-203 705.7
Cpe03g00975 CCT 88 524 COBRA Gene Family AT3G02210 73.1 1.1e-201 699.9
Cpe02g01400 . 19 440 COBRA Gene Family AT3G02210 73.8 5.4e-198 687.6
Cpe18g00713 CCT,ECH 51 436 COBRA Gene Family AT3G02210 75.4 7.8e-189 657.1
Cpe04g01448 CCT,CST,ECH 29 454 COBRA Gene Family AT3G02210 66.6 8.7e-180 627.1
Cpe02g01399 CCT 1 394 COBRA Gene Family AT3G02210 67.8 2.4e-169 592.4
Cpe01g00487 . 24 439 COBRA Gene Family AT3G02210 54.5 3.7e-138 488.8
Cpe04g01449 CCT,ECH 18 446 COBRA Gene Family AT3G29810 73.3 1.8e-198 689.1
Cpe03g00975 CCT 103 524 COBRA Gene Family AT3G29810 71.3 2.3e-193 672.2
Cpe02g01400 . 28 448 COBRA Gene Family AT3G29810 72.0 4.8e-191 664.5
Cpe18g00713 CCT,ECH 18 438 COBRA Gene Family AT3G29810 70.5 4.3e-184 641.3
Cpe04g01448 CCT,CST,ECH 38 436 COBRA Gene Family AT3G29810 67.2 8.2e-175 610.5
Cpe02g01399 CCT 1 393 COBRA Gene Family AT3G29810 66.9 3.3e-168 588.6
Cpe01g00487 . 36 433 COBRA Gene Family AT3G29810 55.1 2.0e-136 483.0
Cpe04g01448 CCT,CST,ECH 32 363 COBRA Gene Family AT5G15630 83.4 3.0e-177 618.2
Cpe02g01399 CCT 1 304 COBRA Gene Family AT5G15630 84.5 5.4e-166 580.9
Cpe04g01449 CCT,ECH 31 361 COBRA Gene Family AT5G15630 74.4 7.5e-152 533.9
Cpe03g00975 CCT 103 434 COBRA Gene Family AT5G15630 66.9 2.9e-143 505.4
Cpe02g01400 . 29 358 COBRA Gene Family AT5G15630 67.0 4.6e-141 498.0
Cpe18g00713 CCT,ECH 29 353 COBRA Gene Family AT5G15630 69.2 3.1e-137 485.3
Cpe18g00714 CCT,ECH 32 152 COBRA Gene Family AT5G15630 88.4 1.7e-66 250.4
Cpe03g00975 CCT 101 294 COBRA Gene Family AT5G60950 61.5 1.9e-65 246.1
Cpe02g01400 . 13 220 COBRA Gene Family AT5G60950 58.4 2.7e-64 242.3
Cpe04g01449 CCT,ECH 30 224 COBRA Gene Family AT5G60950 57.1 6.7e-63 237.7
Cpe04g01448 CCT,CST,ECH 51 231 COBRA Gene Family AT5G60950 58.0 5.0e-58 221.5
Cpe18g00713 CCT,ECH 51 216 COBRA Gene Family AT5G60950 60.2 5.1e-55 211.5
Cpe02g01399 CCT 1 172 COBRA Gene Family AT5G60950 55.8 2.4e-52 202.6
Cpe01g00487 . 27 436 COBRA Gene Family AT1G09790 59.3 4.1e-150 528.5
Cpe03g00975 CCT 90 504 COBRA Gene Family AT1G09790 51.9 6.0e-133 471.5
Cpe04g01448 CCT,CST,ECH 41 434 COBRA Gene Family AT1G09790 53.4 1.0e-132 470.7
Cpe04g01449 CCT,ECH 20 432 COBRA Gene Family AT1G09790 52.0 6.6e-132 468.0
Cpe02g01400 . 16 428 COBRA Gene Family AT1G09790 51.0 8.9e-129 457.6
Cpe18g00713 CCT,ECH 47 424 COBRA Gene Family AT1G09790 54.3 5.1e-124 441.8
Cpe02g01399 CCT 4 375 COBRA Gene Family AT1G09790 52.0 6.8e-121 431.4
Cpe03g01343 CST 33 647 COBRA Gene Family AT4G16120 65.6 8.0e-251 863.6
Cpe08g00164 CST 38 635 COBRA Gene Family AT4G16120 66.3 2.3e-250 862.1
Cpe08g00164 CST 13 656 COBRA Gene Family AT3G16860 60.7 2.2e-237 818.9
Cpe03g01343 CST 13 631 COBRA Gene Family AT3G16860 62.6 7.2e-236 813.9
Cpe08g00164 CST 16 647 COBRA Gene Family AT5G49270 59.5 8.1e-235 810.4
Cpe03g01343 CST 11 631 COBRA Gene Family AT5G49270 60.6 3.1e-234 808.5
Cpe08g00164 CST 34 652 COBRA Gene Family AT3G20580 54.4 8.6e-208 720.7
Cpe01g00854 . 63 601 COBRA Gene Family AT3G20580 53.7 2.0e-204 709.5
Cpe03g01343 CST 29 649 COBRA Gene Family AT3G20580 53.7 3.7e-203 705.3
Cpe01g00854 . 57 602 COBRA Gene Family AT4G27110 53.7 3.1e-202 702.2
Cpe08g00164 CST 31 652 COBRA Gene Family AT4G27110 52.2 9.4e-199 690.6
Cpe03g01343 CST 26 641 COBRA Gene Family AT4G27110 51.1 3.1e-194 675.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01448 Cpe_Chr04 FPKM 542.420898 581.262268 1005.375122 1034.720215 420.45636 421.03833 424.33728 2175.112549 2095.86377 2049.862305