Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01449 ATGAGGTCTCGGCTCTTCTCTTCTACTGGATCCGTCGCCGAACTTACTGGCTTTGGCCTCTTGCTTCTCTTTCTACTTTCATGCTTCAGTTTCACTTCGACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACCATCAAATGGGATGTTATGAGCTGGACTCCGGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACACTGGGCTGGACATGGGCAAAGAAAGAAGTGATTTGGAGCATGATGGGAGCCCAAACAACGGAACAGGGAGACTGTTCAAGGTTCAAAGGAAATACTCCACATTGCTGCAAGAAAGATCCAACCGTTGTGGATCTGTTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGTAAGGGTGGAGTGATAAACTCCTGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTCAAACTCCCCAAAAACTTCACTCTTAAAGCACCGGGACCTGGATATACTTGTGGTCCAGCAAAGATTGTGAAGTCAACCAAATTTATATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAAAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACCATCGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAACAATACGGCGGGTTCTGGGAGCTGTGTGAATCCAGATTCTCCACATTTAGCTTCAGTGGTATCAACTCCTGATAAATCGGGCAACTATGAACCCCTGATTCAGTGTACTAGCCACATGTGTCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGACTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTTGTGGCGCAGCATCCCAATTTTGATAACATAACTCAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCCTATGGTGACCTAAATGATACTGCTATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTCGGTAATGTGCAGTCTGAGCTCCTATTCCGGAAAGACCAAAACACTTTCACTTTCGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGAGGCCTATCCCTATTTGCCAAATGCCAGTTCCAGACCAGCTATGTCTTTACTTGCGACAGTCTTAATATCTCTGGCATTACTGTTGAATTTTGCTCTGTAA 1368 44.44 MRSRLFSSTGSVAELTGFGLLLLFLLSCFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGAQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVKSTKFISGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVNPDSPHLASVVSTPDKSGNYEPLIQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVAQHPNFDNITQLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFRKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPEAYPYLPNASSRPAMSLLATVLISLALLLNFAL 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11570360 11574485 - Cp4.1LG04g14470.1 Cpe04g01449 469011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01449 455 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cpe04g01449 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Cpe04g01449 455 PANTHER PROTEIN COBRA 11 451 IPR006918 GO:0010215|GO:0031225
Cpe04g01449 455 PIRSF COBRA 10 455 IPR006918 GO:0010215|GO:0031225
Cpe04g01449 455 PANTHER COBRA-LIKE PROTEIN 11 451 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01449 Cpe18g00713 CCT
Cpe04g01449 Cpe18g00713 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00487 Cpe-Chr1:2811379 Cpe04g01449 Cpe-Chr4:11570360 2.75E-168 dispersed
Cpe03g00975 Cpe-Chr3:7848729 Cpe04g01449 Cpe-Chr4:11570360 0 dispersed
Cpe03g01343 Cpe-Chr3:10899780 Cpe04g01449 Cpe-Chr4:11570360 6.30E-38 dispersed
Cpe04g01449 Cpe-Chr4:11570360 Cpe18g00713 Cpe-Chr18:7036903 0 dispersed
Cpe04g01448 Cpe-Chr4:11568796 Cpe04g01449 Cpe-Chr4:11570360 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01449 - - csv:101213424 885.174