Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01453 ATGTATGGTCAACCAAATTATGGTTCTCAGTTCGGGCAGGGTCCTCAGAAACCATGGCCACCTACATACCAACAGCGTGCAGTAGCACCTCCTCCGCCTCCTCCTCCTACCTCATATATTCAACCAGGCCCTCCAATCCCATCACGTCCTATAACTCAACAACCACCTGCCCCTCAGCTCCAGGCAGGGCAACCTCTTCATTTGTCTCAGTCTGGTTCCCATGGCCCACCCCCACCCCCTCCCCCACCTCCCCTTTGTCAGCGCCCATCCATTCAAGTTCTATCTGGTGGGATCACAAATATCCATCAAACATATTTTCACACGTTTCCACCAGTCCATGGAAGCACACAAGTTTCTCAATTTAACTCAAATGCTCAGCAGAATGTACAACTTTCACACTCTGGAGTTCAGAACACGCATCACGTTCTACCTCCACCACCGCGGCTACCACCGCCGCCACCACGCCCTCTTCATGCTCCTAGTCCGGATTTATTACGGCCTCCGCAGTTTTCTACTATAGTACCTCTTCATCCTCGTTCCCAAGGACAAACATTGTATGGAGCTCGAATTAATCCACCGTTGCAACAAGGTGGTTTGCAGATCTTTCCCTCTATCCCACAACATCCCACAACATCCAATTTTCCTACTCCCCCTTCTTTTGGAGGACTCATGCAATCAAATCTTGGAGAATCTCATTTGCTTCCAGTGGCTCCTCCACCACCACCATCCTCTCCACCACCTATTCCACCTTCTCCCCCTCCTCCCACCTCGCCTTCTTCTTCAATTCCAAACTCAGATTCCTCCAACTTGTTGTGCCAGATTGAATTTGATCCTAGTTCTACCATTCACTGTAGTAAAAGGTTAAAGGCATTTGAAAATGATCCAGTAGTCGCATCTCCCAGTCATTTAGGGAATAATAGACCCAAGCATGACAAACACAGAAATTTAGAGGGTGGTATTGGCCTCGTGATGGGTTCTAAAGTTGACAATGAGATATTGTCAGACAAAGATTATGTGCAGGTTCTTCCTCCATCTCCACCTAAGCCAAAAGATGATAGAATTGTCAGGAAAATAGAAGTATTATGTCAGCTCATTGCTAGTAATGATTCCAGTTTTGAAGACGCAACTCGTCACAAGGAATTTGGGAATCCAGAGTTTCAATTTTTATTTGGTGGTGAACCGGGAAGTGAATCTGCAATTGGCCATGAATATTTCCTGTGGATGAAGAAGAAATATAGCTTGGCTTGCAAAAATAAAGAAATGAAAGAAAAATTTCCATCGAGATCTTTAAGCATTGAACCACAATCTGAGTATTTGACAGTGTCAGCAGCATCCATTTCACCTGCAAACTCTGACATGGAGATGGGAGATGACATCACCCCAGCTGCTAGAGGAGAGGAAACTGGTCGCTTAGTTCAAATTCAAAGCTACAAGAGAAAATCAAGAAAAGAGGAGCATGATGTAAAGGATCAGTTACAAGGACCTGAAGATTTACAAAGATGTAGCCGAGAAAAGGAGAAAGAAGCTGAAGATGGAGGGCCGAAACTTCTGCTTGGCCATGAAAAATCTGTCAGCGTTGCAGCTTGTCAAGTTCACATTCCTGTCAGAATTTCTGCTGGACTTTCTGAACCGCCTTTAGGAAACAATTTTGAGAGTTCTGTTACGTGCTCGCAAAATGACAAAAATCTATCTGGTGAAGTTGCAGCTTTTGAAGCCACTAATTCTAGTCAGTCTGCTGCACTTGTTGCAGGTGGCAGCCCGTTTAGACTTATACAGGACTATTCTTCGGATGAAAATTCAGAAAGCGATGAGGAATCACACCTGAAAGATGTCCGGTTTGTTCCTGTCTCACCTTCAACTCCAGTATCTTCCAAGACTTCAGACAAAGACACTGATCAACTGACTAACCTTGGATCAAAAGGTTCTTGCCAGGTTGAACTGAGTTATGCTCCAACTTGTGAATACTCCATGCCTGAATCTGGTGCTCATTTCCTCTCAGAACCACCAAAGTTGGTTTTTGATGCCAATGAGGCAAATGTCAGAAAGACAGGGAATGAACAGAGTTGCAACAACCAACGGAATCAAATTGGTACTAGCACCAGTCCTAAGTCTTTGGATGCATTGAATGGTCGAAGTGTTGATGTTGTCCAGGATACTGACAAGTTACGAAAGGAAAATGATGAGGAAAAGGTGAAGCTGGGATCATCTCCTGTAAAAATAGATGAATTTGGAAGATTAGTTAGAGAAGGTGGCAGTGATAGTGATTCAGATGATTCGCTCTATATAAGGAGACATAAGAATAGAAGAGCTAGAAGTAGTAGCGAAAGTCATTCTCCTGTCGATAGAAGGAGGGGACGAAGGAGTCCATGGAGAAGAAGGGAGAGGCGAAGCCGCTCTCGCAGTTGGTCTCCTCGTAACCAAAGAGGCAGAGGCAGAAGCAGAAGCAGAAGCAGGTCTCCTGTCAGCAGACGTACAAATCAATTTAATAATGAGAATATGAGACGGGATAAGGGTATGATACGGAAATGCTTTGACTTTCAGCGCGGTAGGTGCTATAGAGGAGCATCTTGTCGCTATGTGCACCATGAACCCAGCAAGAACGATGGATCAAGACTTCAAAGGAGCAAACATCATGATGTTCACCCAACTTCAAAGAATATAGGAAGTAGAGAAGACACTATGAACACGTCTAGGGACATATCAGATCTTGGGCATATTAAAGTTGAGAATCAGGAGTGCATCCAGCATAATGTGTCCCCAAAGCATGATGCTCATGCTTGGAATACTGATAGTCCCACTCGCGATGTGAATAGATGTCAGAGTTCTAGAGATGGAACTAGCTTAGTTGAAGAAGATTTAATAAATTCAAAACCAGCAGGGGCTGTCCACATTCATGTTAACAATAATGGTCAAGAAACAGAGAAGTCTTATGAGCAATGTTCAGTTGTGGCCTCCTCACAATGCATGAGCAATGCTGATACTGAGAAATTCTCTGGTGATATTTCCACAAGCATGCTGACTTCTGCGGAGAATTCTGTGGCTCAGCAATCCAACATGCATGTTTCAGAGCTTCAAACTGCCAATAGCCACTCACGCCCGATGGATGGTTCTTTTGTCTCCAATTTATTACCTGATCAAGTAACTGTGGTTACCACCAATAAAGCGCCTGAGTGTGAACTTTTTCCGGATAAAACTTCATCCATCAGTGAACAGTTTGATGCCAGTTCTGCTAGTCAGCCACCTACGACCTCACAATTTTTATCGGAGTCTCCAGTACCGAAACAATTTTCTGCTACTGCTCCAGGTTGTGCTAATGACGATGCCCATTCTCTTAGAGCGCTGCCTCCTCCCCCTCCTCTGCTTCCTCACATGATTTCACATGTCACTAGTGCTGAGGTTCCAATTTCTGCCCCATATAGTTTTGTGTCACAAAATGCATCCTTTCCTTCTAAATCTTCGCTGCCAGGAGGTTTTCATCCTCATCAAGATTTTGTATCCATCCAACCATCTAATGACCACAGTACCCCTTTACTGCCACCGAGACGGTTGTATGATTCAGCATTGGCTCCTACAACGACCAAAGATGGTATGCCAATGCAATTTCATCAGAGTAATTTGTCTCAAGGAAGTGATCTAGGTTCTCAGTCTGTTATGAAATCCCAGCCATTGGAGTTGCATTCTCATTCAAAGATTGGTGAGTCCCCATTACAGGAGCCTTGTAGAGCTCCAATGCATATGGATGAAATTAGATCTATTACTCCAGTTGCAACCGATCGACCTAGTCTACCATTTGGATTCCCGAGCTTTTCGAACGAAGAAAACTTTGGGCGAACTTCTGTGGAGATGAATTCTTCAAGTTTTTTTCCTCGGCGAAACTTTAATGACCAATCTATGCCCTTTACAGATGCAAATAGAATGCAATTTTCTGATGACAATTTCCCTCCGAGTGAGTTTCGAAGTTCATTTTCACAGTTTCATCCTTATTCACGGTTTCAACAGCCATTTTATGCCTCACAACCTGCTCATGATGGTTTGTTACGTGACTCAAGTCAGATTGGTACTATGTCTCGACATTATCTCGATCCTTCAATCAGGAACCATCCATCTTTGCCCCCTGATTTTCGGGGTTTGGGAGTTACCACTTATCATAATCCTTATGCGTCTACTTTTGAGAAACCACTCAGCTCCACCTACAGTTCTAAGATTTTGAACTTTGGAAATGATGCACCTAGTGGTGATATACGCGATTCTACTTTCAATGCGAGCAATGCTCGAGTTGATGGGCAAGGTGCTAATTATGTTGGATCAAGACTGACAACTGCGTCACCGAACTCTACCAAACCTTTGGGGAAACTCTTGCCCAGCGCAGGTGGTGATCAGTATGATCCACTCTTTGACAGCATGGAGCCATCATCACCTATAATTAAGAAATCCGATCGTGGTCAAAAGCTGGAAAAAACAAGAGAATCTCATATGACGACAAGACTTGGTAGTTCCCATAAATTACTAGATGTGGAGGAGAACAACAAGCATAAGGAAGTTGTTGCTGTGGCTTCGACTACTTCGCTAGATAATGATGAATTTGGGGAGACAGCTGATGCAGAAGCTGGTGCTGTTGAGGATGACTTTGATGATGAAGCAAACTTATCAGGAGAGATTGAAATTGATCAGGTTAAGTCCTCAGAGAAGAGCAAGAACTCCAAAGGTTCTAGGTCCCTTAGGCTTTTCAGGATTGCTATTGCCGATTTTGTTAAGGAAATTCTAAAACCGTCATGGAGACAGGGCAACATGAGCAAAGAAGCTTTTAAGACAATCGTCAAAAAGACTGTTGACAAGGTATCTGGAGCTATGAAGAGTCACCAAATACCCAAGTCTCAAGCAAAGATAAATCGATACATTGATTCATCACAACAAAAACTTACCAAGCTTGTTATGGGTTATGTTGACAAGTACGTTAAGTCATAG 4965 43.67 MYGQPNYGSQFGQGPQKPWPPTYQQRAVAPPPPPPPTSYIQPGPPIPSRPITQQPPAPQLQAGQPLHLSQSGSHGPPPPPPPPPLCQRPSIQVLSGGITNIHQTYFHTFPPVHGSTQVSQFNSNAQQNVQLSHSGVQNTHHVLPPPPRLPPPPPRPLHAPSPDLLRPPQFSTIVPLHPRSQGQTLYGARINPPLQQGGLQIFPSIPQHPTTSNFPTPPSFGGLMQSNLGESHLLPVAPPPPPSSPPPIPPSPPPPTSPSSSIPNSDSSNLLCQIEFDPSSTIHCSKRLKAFENDPVVASPSHLGNNRPKHDKHRNLEGGIGLVMGSKVDNEILSDKDYVQVLPPSPPKPKDDRIVRKIEVLCQLIASNDSSFEDATRHKEFGNPEFQFLFGGEPGSESAIGHEYFLWMKKKYSLACKNKEMKEKFPSRSLSIEPQSEYLTVSAASISPANSDMEMGDDITPAARGEETGRLVQIQSYKRKSRKEEHDVKDQLQGPEDLQRCSREKEKEAEDGGPKLLLGHEKSVSVAACQVHIPVRISAGLSEPPLGNNFESSVTCSQNDKNLSGEVAAFEATNSSQSAALVAGGSPFRLIQDYSSDENSESDEESHLKDVRFVPVSPSTPVSSKTSDKDTDQLTNLGSKGSCQVELSYAPTCEYSMPESGAHFLSEPPKLVFDANEANVRKTGNEQSCNNQRNQIGTSTSPKSLDALNGRSVDVVQDTDKLRKENDEEKVKLGSSPVKIDEFGRLVREGGSDSDSDDSLYIRRHKNRRARSSSESHSPVDRRRGRRSPWRRRERRSRSRSWSPRNQRGRGRSRSRSRSPVSRRTNQFNNENMRRDKGMIRKCFDFQRGRCYRGASCRYVHHEPSKNDGSRLQRSKHHDVHPTSKNIGSREDTMNTSRDISDLGHIKVENQECIQHNVSPKHDAHAWNTDSPTRDVNRCQSSRDGTSLVEEDLINSKPAGAVHIHVNNNGQETEKSYEQCSVVASSQCMSNADTEKFSGDISTSMLTSAENSVAQQSNMHVSELQTANSHSRPMDGSFVSNLLPDQVTVVTTNKAPECELFPDKTSSISEQFDASSASQPPTTSQFLSESPVPKQFSATAPGCANDDAHSLRALPPPPPLLPHMISHVTSAEVPISAPYSFVSQNASFPSKSSLPGGFHPHQDFVSIQPSNDHSTPLLPPRRLYDSALAPTTTKDGMPMQFHQSNLSQGSDLGSQSVMKSQPLELHSHSKIGESPLQEPCRAPMHMDEIRSITPVATDRPSLPFGFPSFSNEENFGRTSVEMNSSSFFPRRNFNDQSMPFTDANRMQFSDDNFPPSEFRSSFSQFHPYSRFQQPFYASQPAHDGLLRDSSQIGTMSRHYLDPSIRNHPSLPPDFRGLGVTTYHNPYASTFEKPLSSTYSSKILNFGNDAPSGDIRDSTFNASNARVDGQGANYVGSRLTTASPNSTKPLGKLLPSAGGDQYDPLFDSMEPSSPIIKKSDRGQKLEKTRESHMTTRLGSSHKLLDVEENNKHKEVVAVASTTSLDNDEFGETADAEAGAVEDDFDDEANLSGEIEIDQVKSSEKSKNSKGSRSLRLFRIAIADFVKEILKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINRYIDSSQQKLTKLVMGYVDKYVKS 1654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11585901 11594387 + Cp4.1LG04g14510.1 Cpe04g01453 469015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 592 638 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 1069 1095 - -
Cpe04g01453 1654 ProSiteProfiles SURP motif repeat profile. 357 405 IPR000061 GO:0003723|GO:0006396
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 921 944 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 55 71 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 143 159 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 201 226 - -
Cpe04g01453 1654 SUPERFAMILY Surp module (SWAP domain) 336 412 IPR035967 GO:0003723|GO:0006396
Cpe04g01453 1654 ProSiteProfiles Zinc finger C3H1-type profile. 842 864 IPR000571 GO:0046872
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 477 516 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 748 834 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 1 90 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 860 897 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 1437 1495 - -
Cpe04g01453 1654 PANTHER EXPRESSED PROTEIN 1 1653 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 784 819 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 72 88 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 748 764 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 1 20 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 860 886 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 449 516 - -
Cpe04g01453 1654 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1653 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 234 260 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 134 159 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 1476 1495 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 683 706 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 617 638 - -
Cpe04g01453 1654 Gene3D Surp module 354 414 IPR035967 GO:0003723|GO:0006396
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 24 54 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 201 269 - -
Cpe04g01453 1654 MobiDBLite consensus disorder prediction 1069 1103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01453 - - - mcha:111007314 2304.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01453 Cpe-Chr4:11585901 Cpe10g00344 Cpe-Chr10:2002055 3.98E-24 dispersed
Cpe04g01453 Cpe-Chr4:11585901 Cpe18g00712 Cpe-Chr18:7013107 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01453 Cpe_Chr04 FPKM 31.425171 25.296825 12.124498 11.86942 11.136047 15.449574 10.339519 33.729961 30.969097 33.145374