Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01456 ATGTTGAGAAGCTCAAAAGAAAAGGGTTTTGGAGGCAAAGAAGAAGGAATCAGTGATGAAAAATATGATATGGCTAAGGGATCAACGAGGTCAAGGCAGTGGTCAGGGTTTAGAAATCCAAGAATTGTGAGGGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGTACCATTAGGGGTTTGAGAGATAGAAGGATAAGGCTTTCAGTTCCAACAGCAATTCAACTCTATGATCTTCAAGACAAGCTTAAACTTGGGCAGCCTAGCAAGGTCATAGATTGGCTACTCGACGTCACGAAACTTGATATCGACAAGCTTCCGCCGCTCCAGATCCCGACCGGGTTGTCTCCGTTTCACCAACATATGCTCTTCCCTCAATATCATCATAATTCTAGTACTCTCCCTCCTCCTCCTCCTCCTCCGTTCGCCTTTGACATGAAGGATTCTTCGACGATGCATATCAGAGACGTCGTGAATCAAACGACGATGATCGAGAAATCGAAGTCGAAAGGGAAGTGGATTGATGGAGGTAATGATCAAGAAGTTGAAGAAGATTATAATGAGCAAATTATGATGAACAATTGTAATGCTTACAATTACAACACTTGTGATCATGATCATGATCATCAACATTCTAGTGGGGTTTTTCCATCACAAATTGAGGCTCAAACAAGTTCATCTTCATGTTCTTCACTTGTTTTCACTCCATATGCTTCATACATCACAAACCCATTTGAAAGCCACATCCATTTCTTGAGCTCAAATTCTCATACTTTGTCCAATCCCTTCATACCATCATCTCTCCACCCTTTTGCCTCACAAAACTTGAAACCCTTTCCTCCAAACTTCAATCTCAAGCAGCTTCTTCATGCTGATAACAACAACGACGGCGGCTCCGGTAAAGACGGGGCGGCGTCTGGTAGCTCATAG 939 42.71 MLRSSKEKGFGGKEEGISDEKYDMAKGSTRSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDKLPPLQIPTGLSPFHQHMLFPQYHHNSSTLPPPPPPPFAFDMKDSSTMHIRDVVNQTTMIEKSKSKGKWIDGGNDQEVEEDYNEQIMMNNCNAYNYNTCDHDHDHQHSSGVFPSQIEAQTSSSSCSSLVFTPYASYITNPFESHIHFLSSNSHTLSNPFIPSSLHPFASQNLKPFPPNFNLKQLLHADNNNDGGSGKDGAASGSS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11614584 11615522 - Cp4.1LG04g14610.1 Cpe04g01456 469018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01456 312 MobiDBLite consensus disorder prediction 292 312 - -
Cpe04g01456 312 PANTHER TRANSCRIPTION FACTOR TCP5 28 311 - -
Cpe04g01456 312 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Cpe04g01456 312 MobiDBLite consensus disorder prediction 1 32 - -
Cpe04g01456 312 Pfam TCP family transcription factor 51 149 IPR017887 -
Cpe04g01456 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 311 IPR005333 GO:0003700
Cpe04g01456 312 MobiDBLite consensus disorder prediction 1 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01456 - - - mcha:111007241 383.645
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01456 Cpe18g00710 CCT
Cpe04g01456 Cpe20g00081 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01404 Cpe-Chr2:12257575 Cpe04g01456 Cpe-Chr4:11614584 4.73E-40 dispersed
Cpe04g01456 Cpe-Chr4:11614584 Cpe20g00081 Cpe-Chr20:421585 6.30E-41 dispersed
Cpe18g00710 Cpe-Chr18:7003353 Cpe04g01456 Cpe-Chr4:11614584 4.86E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g460 Blo04g00796 . . . Bpe12g00521 . Bma06g00019 . Cmo13g01114 . . Cma11g00212 Car10g00278 Car11g00191 Sed08g0281 Cpe20g00081 Cpe04g01456 Bhi02g00091 Tan09g2038 Cmetu07g0568 . Hepe09g0277 . . Cla06g01535 Cam06g1693 Cec06g1756 Cco06g1755 Clacu06g1661 Cmu06g1607 Cre06g2419 . . . . . Csa01g00607 Chy12g01493 Cme12g01933 . . Bda11g01762 Bda14g00885 . Bpe15g00574 Bma03g00857 Bma08g00244 Sed01g2290 Cmo10g00314 Cmo11g00214 Cma13g01069 . Car13g00905 . . Cpe18g00710 Bhi08g01077 Tan05g2351 Cmetu12g1931 Lac10g0172 Hepe07g2456 . . Cla04g01148 Cam04g1204 Cec01g1716 Cco01g1761 Clacu04g1231 Cmu04g1211 Cre01g1507 Lsi06g01407 Csa01g00299 Chy02g02437 Cme02g01824
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01152 . 36 250 TCP Transcription Factor Family AT5G23280 62.7 3.3e-64 242.3
Cpe09g00495 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 2.1e-58 223.0
Cpe20g00029 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.5e-39 160.6
Cpe04g00477 . 33 276 TCP Transcription Factor Family AT3G27010 55.5 5.1e-54 208.8
Cpe01g01152 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 9.6e-61 230.7
Cpe09g00495 . 10 228 TCP Transcription Factor Family AT5G08330 57.0 8.1e-60 227.6
Cpe13g00517 . 1 103 TCP Transcription Factor Family AT5G08330 82.7 3.0e-38 156.0
Cpe04g01456 CCT,CST 31 177 TCP Transcription Factor Family AT5G60970 56.1 2.0e-38 157.1
Cpe03g00977 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006954 1 1 2 2 3 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49435 PF03634 TCP 2.90E-23 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01456 Cpe_Chr04 FPKM 12.877551 9.88448 0.209064 0.197823 7.43121 5.885126 6.345436 0.0 0.0 0.0