Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01458 ATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCCCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTTTAGAGAAGGAGGTAAAATCTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGTGAGTGCGGTTAATACTGGATCTGGCATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGAGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCTCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCCAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGATCTTGTTGATGTTATTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAGAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGGCAGGAGTTGCTTGACATTGCCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTCGGAGCTCAATTTTAATAAATCCAGACATAAAGGAAGCACATCAATTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGTGAAGAAAAGCCAATGTTCTTCAGCATCAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGTGAAAGCTGCCAGAAAAACGACGAAGAGTGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCATGGCTCTCCACATTCAATGCAGAAGCGGAGAGGATTGTTGGGTGCACTGCTGAAGAGCTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTGAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCTGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAG 1869 43.23 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALEKEVKSEVKKEEADIVLKPKQELDVSAVNTGSGILLKPKQELVAKSAAQIVHEQSTNMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11631581 11635043 - Cp4.1LG04g14620.1 Cpe04g01458 469020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01458 622 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 617 - -
Cpe04g01458 622 Gene3D - 173 281 IPR012340 -
Cpe04g01458 622 CDD RPA1_DBD_C 454 618 IPR013955 -
Cpe04g01458 622 Pfam OB-fold nucleic acid binding domain 189 274 IPR004365 GO:0003676
Cpe04g01458 622 Gene3D - 6 112 IPR012340 -
Cpe04g01458 622 SUPERFAMILY Nucleic acid-binding proteins 294 423 IPR012340 -
Cpe04g01458 622 SUPERFAMILY Nucleic acid-binding proteins 3 108 IPR012340 -
Cpe04g01458 622 Pfam Replication protein A OB domain 307 403 IPR031657 -
Cpe04g01458 622 Gene3D - 289 429 IPR012340 -
Cpe04g01458 622 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe04g01458 622 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe04g01458 622 CDD RPA1_DBD_A 178 281 - -
Cpe04g01458 622 PANTHER REPLICATION FACTOR A 1, RFA1 5 617 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe04g01458 622 SUPERFAMILY Nucleic acid-binding proteins 444 619 IPR012340 -
Cpe04g01458 622 SUPERFAMILY Nucleic acid-binding proteins 177 285 IPR012340 -
Cpe04g01458 622 MobiDBLite consensus disorder prediction 1 22 - -
Cpe04g01458 622 CDD RPA1_DBD_B 311 417 - -
Cpe04g01458 622 Pfam Replication factor-A C terminal domain 466 612 IPR013955 -
Cpe04g01458 622 Gene3D - 430 619 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01458 Cpe-Chr4:11631581 Cpe11g01188 Cpe-Chr11:9720977 1.15E-97 dispersed
Cpe04g01458 Cpe-Chr4:11631581 Cpe08g00899 Cpe-Chr8:7098340 1.29E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01458 K07466 - csv:101208545 1075.08