Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01464 ATGGCGGCCCACTCCTCAACTTCCAATAACGACCGAGCTTTGAGAACTGCAACTTCTAATCAGTTCTTTGCATGGAGGGAATTTATATGGGGAGCTATTGCTGGAGCATTTGGAGAAGGAATGATGCACCCTATTGATACCATAAAGACTCGGATTCAAAGCCAGGCTATTCTATATGGAAGTCAAAATCAAAAGGGCCTGTTGCAGATGGTCCAATCAGTATGGAAAATTGACGGATTTAGGGGCTTTTATAGGGGTATAGCTCCTGGAGTTACTGGCTCACTTGCCACTGGAGCTACATACTTTGGTGTCATTGAGTCCAGCAAGAAATGGATTGAAGAAACACATCCTAGCCTTGGCGGTCATTGGGCTCATTTCATTGCTGGAGCAGTTGGCACAAGGTCATCTTGGAGCTCCCTTCCCATGAAGGATAATATCTCTATGAAGCATGGTGGGCAAATGTATGGCTATTATTCAGGGATGTTCCAGGCTGGTCGTTCAATCTTGAAGCAACAAGGACTAAGAGGATTGTATGCAGGATATTGGTCTACACTTGCCAGGGATGTGCCGTTTGCTGGTCTAATGGTCATGTTTTATGAGGCGCTAAAAGATTTGACCGAGCATGGGAAGCAAAGATGGATGCCTAATTCAGATGTTAATAGCTCCTTGGAAGGACTTGTGTTGGGGGGATTAGCTGGTGGTCTCAGTGCTTATCTGACCACTCCCTTGGATGTGATCAAAACAAGAATGCAAGTTCAGGGATCAAATTTCAGGTATAACAGCTGGTTAGATGCAGTGAGAACTATATGGGGGAGTGAAGGAACAAAGGGGATGTTTAGGGGTAGCATACCCAGAATCACATGGTACATTCCAGCTTCTGCTCTAACTTTTATGGCTGTAGAATTTCTGAGAGACCATTTCAATGAAAGATTGGACGATGAATCCAAAAAAGAAGCTACTAGCTTATCAGCTGACAGAAAAGGAACTTTGGGAGAAGTAGCATAA 1005 44.18 MAAHSSTSNNDRALRTATSNQFFAWREFIWGAIAGAFGEGMMHPIDTIKTRIQSQAILYGSQNQKGLLQMVQSVWKIDGFRGFYRGIAPGVTGSLATGATYFGVIESSKKWIEETHPSLGGHWAHFIAGAVGTRSSWSSLPMKDNISMKHGGQMYGYYSGMFQAGRSILKQQGLRGLYAGYWSTLARDVPFAGLMVMFYEALKDLTEHGKQRWMPNSDVNSSLEGLVLGGLAGGLSAYLTTPLDVIKTRMQVQGSNFRYNSWLDAVRTIWGSEGTKGMFRGSIPRITWYIPASALTFMAVEFLRDHFNERLDDESKKEATSLSADRKGTLGEVA 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11661315 11665145 + Cp4.1LG04g14530.1 Cpe04g01464 469026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01464 334 Pfam Mitochondrial carrier protein 23 113 IPR018108 -
Cpe04g01464 334 Pfam Mitochondrial carrier protein 223 309 IPR018108 -
Cpe04g01464 334 Pfam Mitochondrial carrier protein 146 206 IPR018108 -
Cpe04g01464 334 MobiDBLite consensus disorder prediction 314 334 - -
Cpe04g01464 334 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 330 - -
Cpe04g01464 334 Gene3D Mitochondrial carrier domain 4 142 IPR023395 -
Cpe04g01464 334 PRINTS Mitochondrial carrier protein signature 178 196 IPR002067 GO:0055085
Cpe04g01464 334 PRINTS Mitochondrial carrier protein signature 40 54 IPR002067 GO:0055085
Cpe04g01464 334 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Cpe04g01464 334 PRINTS Mitochondrial carrier protein signature 27 40 IPR002067 GO:0055085
Cpe04g01464 334 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 330 - -
Cpe04g01464 334 Gene3D Mitochondrial carrier domain 143 325 IPR023395 -
Cpe04g01464 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 306 IPR018108 -
Cpe04g01464 334 SUPERFAMILY Mitochondrial carrier 23 303 IPR023395 -
Cpe04g01464 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Cpe04g01464 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 205 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01464 - - - csv:101208060 602.053
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01464 Cpe18g00704 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01464 Cpe-Chr4:11661315 Cpe16g00674 Cpe-Chr16:7025832 1.17E-33 dispersed
Cpe18g00704 Cpe-Chr18:6965984 Cpe04g01464 Cpe-Chr4:11661315 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01464 Cpe_Chr04 FPKM 11.883025 12.95846 18.151176 18.488579 32.477882 30.244444 31.427517 13.637733 13.231905 13.253394