Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01466 ATGTCCGGCGATGTGAAGGGAAATAACTTGGTGGTGATTCCGTTTGGGGCTGGGCGGAGGATCTGCGTGGGTATGAGTTTGGGCCTGAGAATGGTCCAGATGTTAACTGCAACGCTCGTCCATTCGTTTCATTGGGCCTTGCCGAACGGGCTTTTGCCCAGTAAGTTGAACATGGACGAGGCCTCTGGACTGACTCTCCGTCGGGCCCAGCCCTTGGTTGCTCATCCTCGGCCCAGTATTAGTTTTTCCCGCCGGCGTCTTCCAACGATCCGTGCAACATGGTGTGTTTGCAAGAGCGGATTGGGCGATGCAGCTCTTCAGAAGACACTGGACTACGCTTGTGGAGCTGGGGCTGACTGTGTCCCTATTCATCAAAATGGTGGCTGTTTCCTTCCCAACACTGTCGAGGCCCATTGTTCCTATGCTGCTAATAGCTATTTCCAAAGGAAGGGCCAAGCTCCAGGTTCCTGTGATTTTTCTGGCACAGCAATGGTCACTACTACCAACCCCAGCATTTCAGGCTGCGTTTATCCTTCTAGCGCTAGCCCTGTAAATAGTGGGACTATTCCAGTGTCTGGGACTCCAACCACCACCAACCCGGGCACTGGATTTACTCCAACCACCACAACCAACACTCCATTTGGTTCTACAACACCTACCGGCGGTGTCATGGGCGGGAACGGCTTCGGCACCGGTAGCAACGGTCTAGGACCACCGGGCGTTGGCGGGATGAACACCGACTACAGTGCCAGCGGATCAAGGCTCCAACTTACTCTCATTGCTAATGTACTTGCTTTCTTGTTTGCAATCATGTTCTTTAAGCATATGGTTTGA 834 53.0 MSGDVKGNNLVVIPFGAGRRICVGMSLGLRMVQMLTATLVHSFHWALPNGLLPSKLNMDEASGLTLRRAQPLVAHPRPSISFSRRRLPTIRATWCVCKSGLGDAALQKTLDYACGAGADCVPIHQNGGCFLPNTVEAHCSYAANSYFQRKGQAPGSCDFSGTAMVTTTNPSISGCVYPSSASPVNSGTIPVSGTPTTTNPGTGFTPTTTTNTPFGSTTPTGGVMGGNGFGTGSNGLGPPGVGGMNTDYSASGSRLQLTLIANVLAFLFAIMFFKHMV 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11667711 11671789 - Cp4.1LG04g14810.1 Cpe04g01466 469028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01466 277 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 15 24 IPR017972 GO:0005506|GO:0016705
Cpe04g01466 277 MobiDBLite consensus disorder prediction 189 215 - -
Cpe04g01466 277 Pfam Cytochrome P450 7 53 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe04g01466 277 Gene3D Cytochrome P450 2 77 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe04g01466 277 Pfam X8 domain 93 164 IPR012946 -
Cpe04g01466 277 SMART X8_cls 93 177 IPR012946 -
Cpe04g01466 277 SUPERFAMILY Cytochrome P450 6 78 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe04g01466 277 Gene3D - 89 184 - -
Cpe04g01466 277 PANTHER BETA-1,3 GLUCANASE 90 261 IPR044788 -
Cpe04g01466 277 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3 90 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01466 - - - bhj:120070754 253.062
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01466 Cpe18g00701 CCT
Cpe04g01466 Cpe18g00701 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01466 Cpe-Chr4:11667711 Cpe09g01166 Cpe-Chr9:9884744 6.68E-47 dispersed
Cpe04g01466 Cpe-Chr4:11667711 Cpe04g01467 Cpe-Chr4:11672238 4.56E-37 tandem
Cpe18g00186 Cpe-Chr18:3458559 Cpe04g01466 Cpe-Chr4:11667711 1.50E-11 transposed
Cpe01g01504 Cpe-Chr1:8973367 Cpe04g01466 Cpe-Chr4:11667711 1.78E-33 wgd
Cpe18g00701 Cpe-Chr18:6952652 Cpe04g01466 Cpe-Chr4:11667711 1.32E-83 wgd
Cpe04g01466 Cpe-Chr4:11667711 Cpe09g00219 Cpe-Chr9:1257760 3.64E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g649 . Blo16g00170 Bda06g00526 . . Bpe13g00310 . Bma12g00970 . . . . . Car11g00180 Sed12g1997 . Cpe04g01466 Bhi02g00692 Tan09g2050 Cmetu02g1984 . . . . Cla06g01545 Cam06g1705 Cec06g1766 Cco06g1766 Clacu06g1672 Cmu06g1618 Cre06g2431 Cone2ag0806 Cone16ag0202 Cone13ag0038 . Lsi02g00116 Csa01g00594 Chy12g01504 Cme12g01948 . . Bda11g01721 Bda14g00876 Bpe07g00760 . Bma03g00848 . . . Cmo11g00205 . . . Car18g00006 . Cpe18g00701 Bhi08g01093 . . Lac10g0143 . . . Cla04g01158 Cam04g1217 Cec01g1728 Cco01g1773 Clacu04g1244 Cmu04g1223 Cre01g1519 Lsi06g01420 Csa01g00286 Chy02g02449 Cme02g01836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000407 3 5 2 5 4 4 7 5 3 3 3 4 5 4 3 6 4 7 7 4 4 4 3 3 3 4 4 4 5 2 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01466 Cpe_Chr04 FPKM 2.683012 2.769567 8.925706 9.361634 6.378225 4.89715 5.856753 70.260155 70.225807 71.313011