Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01469 ATGGGGGGAGAAAATGACATGAAAACGTGGATTTCTGATCAGTTAATGTCACTGCTTGGTTTCTCTCAGCCAACAATTGTACAGTATATGATTGGACTATCCAAACAAGCAGCATCACCTGCTGATGTAGTGAGCAAGTTGGTGGTGGATTTTGGCTTGCCATCTTCCAATGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGAAATCAACTGCCAAACAAGCAGCATCACCTGCTGATGTAGTGAGCAAGTTGGTGGTGGATTTTGGCTTGCCATCTTCCAATGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGAAATCAACTGGTCTAAATCTTTATCAGAAGCAAGAGAGAGAAGCTGCAATTTTAGCAAGAAATCAAAAAAAATACACACTACTCGATGCTGACGACGAAGAGGTTCTTGAAGATAAAGGAGGCAGTGGTGATCCCCGAGAAACAGAAAATCGCAAAAAACGCTTTAGAAAGAAAAACGAATATCAAGAAGATGAAGATGATGAGGAAGAAAGTGCTCTTGAAAGAGAAAATAGGCAGGTTAAAAGACGGACTTCCAGTTCTGAAGACGATGGCTCTGAGTCGGAGGAAGAGCGACAGCGTGATCAAAGAGAGAGGGAGCAATTAGAGCGAAATATAAGAGAACGTGATGCTGCTGGAACCAAAAAGTTAACAGAACAGAAATTGAGCAGGAAGGAGGAAGAAGAGGCAATTCGGAGATCCAAAGCTTTGGAGAATGATGGAACCGATACTTTGAGGAAAGTTTCAAGACAGGAGTACTTAAAGAAAAGGGAGGAGAAGAAACTGGAAGAAATCAGAGATGATATAGAAGATGAGCAATATCTTTTTGACGGCATGAAGCTTACTGAAGTAGAATATCGGGAGCTAAGGCAAGAGTATAAGAAAGAAATATATGAGCTTGTGAAGAAGCGGACAGACGAGGCTGATGAAATCAATGAGAGGAAGATGTTGTGTAGTGGTGGTGGAACAGCTGAAGGGGAGGAGTTCCACCTTATTCATTTCTGTGGGAACAGAGTTAAGGAAAAGGCTTCTGATTTGTGGGCTAAGGTGAAGAAAGGCATTAAGTATCGGTTTGATTTGAATATCCGTTACAGGATGCCTGAAGCTTATGATCAGGAAGGAGGTGTTAATCAGGATAAGAGGTTTGCAGTGGCAATGCAGCGGTATAGGGATTCAGGTGCTGCAGATAAGATGAACCCATTTGCAGAACAAGAGGCATGGGAGGAACACCAAATAGGGAAAGCATCAATGAAATTTGGTTCCAAAAATAAGAAGCAAGCCGATGATTATCAGTTTGTATTTGAGGATCAGATTGAGTTTATTAAGGCTTCAGTTATGGAAGGTGATGAGTTTGTTGATGAACATCAGATTGAATCACTTGAAAAGTCCAAGGCTAAGTCAGCTCTGGAGAAGCTGCAGGAAGAGAGAAAAACATTGCCAATTTATCCATATCGTGATCAGTTACTCCAAGCTGTAAATGATTATCAGGTTCTTGTAATTGTCGGTGAAACTGGTTCGGGAAAAACCACACAGATACCTCAATATCTTCATGAAGCTGGGTACACAAAGCGAGGAAAAGTTGGATGCACACAACCGCGTCGAGTTGCTGCTATGAGCATTGCTGCCCGAGTATCTCAAGAACTGGGTGTCAAGCTTGGCCATGAGGTTGGTTATTCAATACGTTTTGAGGATTGCACGTCAGATAAGACTATTTTGAAGTACATGACAGATGGGATGTTGTTACGAGAATTCCTTGGCGAACCTGACCTTGCAAGCTACAGTGTTATAATGGTGGACGAGGCTCATGAAAGAACATTATCAACTGATGTTCTGTTTGGGTTAGTGAAGGATATTGCGAGGTTTCGACCTGATTTGAAATTGCTAATTTCAAGTGCAACACTTGATGCGGAGAAGTTCAGTGATTACTTTGATTCAGCTCCAATATTTAAAATTCCTGGTAGACGATATCCTGTAGAAATTAACTTCACAAAAGCTCCAGAAGCGGACTATTTAGATGCAGCAATTGTGACTGCGCTTCAGATTCATGTCACAAAGCCTCCAGGAGATATATTGGTGTTTCTCACTGGTCAAGAAGAGATTGAAGCAGCTGAGGAAATAATGAAACATAGAACTCGAGGACTAGGCACAAAAATTTCCGAACTCATTATCTGCCCCATATATGCCAACTTACCAACAGAGCTACAGGCTAAGATATTTGAACCCACACCCATAGGAGCAAGGAAAGTTGTCCTGGCAACTAATATAGCAGAGACATCATTAACGATTGATGGAATAAAATATGTTATTGATCCTGGCTTTTCAAAAATAAAATCCTATAACCCAAGGACTGGGATGGAGTCGTTGCAAGTGAGTCCCATTTCTAAAGCATCAGCAAACCAAAGAGCAGGCCGTTCTGGACGAACAGGCCCTGGAATGTGCTTTCGTTTGTATACTGCTTATAGTTATTATAATGAGATGGAAGACAATACAGTACCAGAAATTCAAAGAACAAACCTTGCTAATGTTGTGCTTACACTTAAGAGCCTTGGTATTCATGACTTGGTAAATTTTGATTTTATGGACCAACCTCCATCTGAAGCATTGCTAAAAGCTTTGGAACTTCTCTATGCACTTGGTGCTTTAAATAAACTGGGCGAACTGACTAAGATGGGCAGGCGGATGGCTGAGTTTCCTCTTGATCCCATGCTTTCCAAGATGATGGTTGCTTCTGAGAAGCACAAGTGTTCAGATGAGATTATTTCTATTGCAGCTATGCTTTCTATTGGAAATTCTATCTTTTATCGCCCGAAGGATAAACAAGTTCATGCTGACAATGCTCGAATGAATTTTCACACTGGGAATGTGGGGGATCACATTGCATTGCTGAAGGTCTACAACTCTTGGAGGGAAACAAATTACTCTACGCAATGGTGCTATGAGAACTACATCCAGGTTAGAAGTATGAAACGTGCTAGAGATATCAGAGATCAACTTGAAGGGCTATTAGAAAGGGTTGAAATCGAACTGACTTCAAATTTGAATGACTTGGATGCAATAAAGAAGACCATAATATCTGGTTTTTTCCCTCACTCTGCAAAGTTACAAAAGAATGGCTCGTATCGGACCATTAAGCATCCACAGACAGTTCATATACATCCAAGCTCAGGGTTGGCTCAGGTTCTCCCCAGATGGGCTGTGTACCATGAATTAGTATGTACCTCAAAGGAATACATGAGACAGGTAACGGAATTGAAGCCCGAATGGTTGGTTGAAATTGCTCCACATTTCTATCAGCTTAAAGATGTCGAAGATTTGAGTCAAAAGAAGATGCCTCGCGGACAAGGTCGACCTGCAGAGAACTAA 3429 41.44 MGGENDMKTWISDQLMSLLGFSQPTIVQYMIGLSKQAASPADVVSKLVVDFGLPSSNETLAFAEGIFSRVPRKKSTAKQAASPADVVSKLVVDFGLPSSNETLAFAEGIFSRVPRKKSTGLNLYQKQEREAAILARNQKKYTLLDADDEEVLEDKGGSGDPRETENRKKRFRKKNEYQEDEDDEEESALERENRQVKRRTSSSEDDGSESEEERQRDQREREQLERNIRERDAAGTKKLTEQKLSRKEEEEAIRRSKALENDGTDTLRKVSRQEYLKKREEKKLEEIRDDIEDEQYLFDGMKLTEVEYRELRQEYKKEIYELVKKRTDEADEINERKMLCSGGGTAEGEEFHLIHFCGNRVKEKASDLWAKVKKGIKYRFDLNIRYRMPEAYDQEGGVNQDKRFAVAMQRYRDSGAADKMNPFAEQEAWEEHQIGKASMKFGSKNKKQADDYQFVFEDQIEFIKASVMEGDEFVDEHQIESLEKSKAKSALEKLQEERKTLPIYPYRDQLLQAVNDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKISELIICPIYANLPTELQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMESLQVSPISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHDLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKMGRRMAEFPLDPMLSKMMVASEKHKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGFFPHSAKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWAVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDLSQKKMPRGQGRPAEN 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11681094 11693666 - Cp4.1LG04g14780.1 Cpe04g01469 469031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01469 1142 MobiDBLite consensus disorder prediction 155 178 - -
Cpe04g01469 1142 MobiDBLite consensus disorder prediction 151 265 - -
Cpe04g01469 1142 Coils Coil 270 297 - -
Cpe04g01469 1142 Gene3D - 456 676 IPR027417 -
Cpe04g01469 1142 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 872 IPR001650 -
Cpe04g01469 1142 PANTHER ATP-DEPENDENT RNA HELICASE 379 1138 - -
Cpe04g01469 1142 SMART ultradead3 499 683 IPR014001 -
Cpe04g01469 1142 PANTHER ATP-DEPENDENT RNA HELICASE 152 331 - -
Cpe04g01469 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 1025 IPR027417 -
Cpe04g01469 1142 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1041 1117 IPR011709 -
Cpe04g01469 1142 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 511 674 IPR014001 -
Cpe04g01469 1142 Pfam Helicase conserved C-terminal domain 703 831 IPR001650 -
Cpe04g01469 1142 Coils Coil 1010 1030 - -
Cpe04g01469 1142 MobiDBLite consensus disorder prediction 189 205 - -
Cpe04g01469 1142 CDD SF2_C_RHA 678 839 - -
Cpe04g01469 1142 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 616 625 IPR002464 -
Cpe04g01469 1142 Gene3D - 677 852 IPR027417 -
Cpe04g01469 1142 Coils Coil 477 497 - -
Cpe04g01469 1142 Gene3D - 877 1034 - -
Cpe04g01469 1142 SMART helicmild6 726 831 IPR001650 -
Cpe04g01469 1142 Coils Coil 207 234 - -
Cpe04g01469 1142 PANTHER OS05G0389800 PROTEIN 152 331 - -
Cpe04g01469 1142 PANTHER OS05G0389800 PROTEIN 379 1138 - -
Cpe04g01469 1142 MobiDBLite consensus disorder prediction 212 265 - -
Cpe04g01469 1142 SMART ha2_5 892 984 IPR007502 GO:0004386
Cpe04g01469 1142 Pfam Helicase associated domain (HA2) 893 967 IPR007502 GO:0004386
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01469 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - csv:101206270 1816.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01469 Cpe09g01050 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01469 Cpe-Chr4:11681094 Cpe12g00878 Cpe-Chr12:7662001 0 dispersed
Cpe12g00915 Cpe-Chr12:7898871 Cpe04g01469 Cpe-Chr4:11681094 4.54E-52 dispersed
Cpe04g01469 Cpe-Chr4:11681094 Cpe07g00929 Cpe-Chr7:8326011 0 transposed
Cpe04g01469 Cpe-Chr4:11681094 Cpe11g00962 Cpe-Chr11:8141316 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01469 Cpe_Chr04 FPKM 1.605201 0.474415 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0