Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01473 ATGTCACATTTTAGGAAATCCCCCATAAATGTTTTAAGGCATGCCTCAGCTCGTTCCAGTCCAAACCCAATTGACTCCAATGATAATTTAGACAAGAATCACAAACACAACTCCTCAGGAATCCCCTCATCTCATAATGCAACTGTAGCACCAAATCCTAGCTCGAATCCTTTCGACGATCATCTCGAGAAAGAGACCGATTCTTCTTCTTCATATTCTTCATCTTCAAGTTCATATCCATGGTCATCAAGAAACAGATACAAAAATGATTTCCAGGACTCAGGTGGGCTTGAGAATCAGACAGTGGAGGAGTTGGAGAATTATGCTGCATACAAAGCTGAGGAGACAACAAAATCAGTGAACAATTGCCTGAAGATTGCTGAGGACATGAAAAAAGATGCAACCAGAACCATGGTTGCCCTGCATCACCAGGGTGAGCAGATCACTCGCACCCATGTGGTTGCTACTGATATTAACAATGATCTTAGTCGGACATGGAAGCCAAGGAAAGTTCGTCAGATAACAGGCCCTGTTATCTTTCAAGGCGATCAGGCTGCCATAAGCAAGAGCAACCATTTGGAGCAAAGGGAGCAGTTGGGACTAAGCCGGGCACCCAACCCACGGCCCTCACGAGCCCCACAGCCTGAGCCAACCAACCCACTTCAGAAAGTAGAGGTGGAAAAGGTGAAACAAGAGGACGCTCTTTCAGATTTGAGCAATATATTGGGAGAGCTTAAAGAAATGGCTGTTGATATGGGACATGAACTAAACAGGCAAAATAAAGCTTTGGATCATCTGTATGATGATACTGATGGCATAACCGTCCGTGTCGATAATGCTAACCGACGTGCTCATCGCTTGCTTAGAAATTAG 873 44.67 MSHFRKSPINVLRHASARSSPNPIDSNDNLDKNHKHNSSGIPSSHNATVAPNPSSNPFDDHLEKETDSSSSYSSSSSSYPWSSRNRYKNDFQDSGGLENQTVEELENYAAYKAEETTKSVNNCLKIAEDMKKDATRTMVALHHQGEQITRTHVVATDINNDLSRTWKPRKVRQITGPVIFQGDQAAISKSNHLEQREQLGLSRAPNPRPSRAPQPEPTNPLQKVEVEKVKQEDALSDLSNILGELKEMAVDMGHELNRQNKALDHLYDDTDGITVRVDNANRRAHRLLRN 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11710465 11713728 + Cp4.1LG04g14730.1 Cpe04g01473 469035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01473 290 MobiDBLite consensus disorder prediction 13 27 - -
Cpe04g01473 290 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 5 289 - -
Cpe04g01473 290 SUPERFAMILY SNARE fusion complex 100 165 - -
Cpe04g01473 290 MobiDBLite consensus disorder prediction 36 55 - -
Cpe04g01473 290 SUPERFAMILY SNARE fusion complex 227 288 - -
Cpe04g01473 290 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 287 IPR000727 -
Cpe04g01473 290 SMART tSNARE_6 220 287 IPR000727 -
Cpe04g01473 290 CDD SNARE_Qc 230 286 - -
Cpe04g01473 290 Gene3D - 96 168 - -
Cpe04g01473 290 MobiDBLite consensus disorder prediction 68 86 - -
Cpe04g01473 290 MobiDBLite consensus disorder prediction 193 222 - -
Cpe04g01473 290 MobiDBLite consensus disorder prediction 1 86 - -
Cpe04g01473 290 Coils Coil 221 241 - -
Cpe04g01473 290 CDD SNARE_SNAP25N_23N_29N_SEC9N 107 164 IPR044766 GO:0005484|GO:0031201
Cpe04g01473 290 Gene3D - 210 290 - -
Cpe04g01473 290 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 5 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01473 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101205328 407.527
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01473 Cpe18g00772 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01473 Cpe-Chr4:11710465 Cpe20g00060 Cpe-Chr20:298428 3.30E-99 dispersed
Cpe01g01498 Cpe-Chr1:8937991 Cpe04g01473 Cpe-Chr4:11710465 3.08E-89 wgd
Cpe18g00772 Cpe-Chr18:7349112 Cpe04g01473 Cpe-Chr4:11710465 2.04E-146 wgd
Cpe02g01037 Cpe-Chr2:9597807 Cpe04g01473 Cpe-Chr4:11710465 2.31E-56 wgd
Cpe04g01473 Cpe-Chr4:11710465 Cpe09g00212 Cpe-Chr9:1223998 1.67E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01473 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 3.536754 4.282095 3.530568 0.0 0.0 0.0