Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01480 ATGGCGCTGTTCAGAAGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAGATATCCGAGAGAGTCTATGTGTTCGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTGGATGGCATTGTAGCACAGTTACAGAGCCACTTTCCTGATGCGTCTTTCATGGTTTTCAACTTTACAGAAGGTGGTAAGCGAAGTCAAGTTTCTGATGTACTGAGTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGATGTCCTTTATTGCCATTGGAGATGGTTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCGCTGCAGGGTCAACAGAATGTGTTATTGATGCATTGTGAAAGGGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTGTTGTACAGAAAACAGTACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTCTTATCTCCTTTAAACCCTCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGAAACTTAGGTTCTGATTGGCCTCCAGCAGATACACCCCTAGTTTTGGATTGTTTAATACTTAGAGTTCTACCTCTTTTTGACGGGGGAAAAGGGTGTAGGCCTCTTGTGCGTGTCTATGGTCAAGACCCCTCAATACCGGCCAATAGAACTTCAAAGCTTTTATTTTCAACATCTATCAACAGAAAACATATCCGAAACTACCAACAGGAAGAGTGTATGCTGGTGAAAGTTGATATTAATTGCCATATTCAAGGGGACGTAGTTGTTGAATGCATCCATTTGGATGAAGATCTAGTACACGAGAAGATGATGTTTAGAGTTATGTTTCACACAACATTTGTTAGATCAAATATTATAATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCAAGGGACCAGCTCCCTAAGGACTTCAGAGTTGAGGCACTCTTTTTGGGTGCTGATGCTGATGTCGTTGTCCCCAATCTTACCACAACCTTTGATGATGAAGATGAATATGAAGCTGGAGTTGCTTCTCCTGAAGAATTTTTTGAGGTTGAAGAGATTTTCAGTAATGCAATGGATGGGCAGGAAGCAAAGGGATCCTATCATCCTCAATTGATCAATCGTGCAGACCGTAAAGCAGATTGGAAGGAGGACTTTGATCCGCCTGCATTCCAAGATTGTGCTACTGATGATGGAAATCTCAAGCATGTGAAGAAATCAGATTTTGATGCAGTGAAGGACATTGCTGTGGATGATGTGAAGTACAAGCTGGATGAAAATATATATTCCGACCTTAATGCTGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAATTCCTTCCTGGTTGCTGCTGCTAATGTCTTGACTCATGTGAAAGCCCAGGGGTTGGTAGATGCCGCATATGGAAAAGTTGAAGATAATGAAGAAAAGGATGATGGAAGAGATGCTGCACCTGCGAAATTGGAAAACAAGGTTCTTCAGAAAAAGCTGAGTGCTGATGGTTCTAGACAAAAATCTGAAAAATTGCAAACACCAATCCCCAAGAAACAGCCTATTCCAAGTGGAAAACCTACCACTGATATGGTTTCAGCCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTTTCTGCAAAACAAGCAAAGCCGAATGCAGCTTCTAGGTGGATTCCTCCTAACAAAGGCTCTTATATGAACTCTATGCATGTATCCTATCCTCCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCCAGTATTGCACCATCAAAGGATACAAGTGCAAATTCCAAAACAAAGGGTGCTGCCACCCTTGATTCTCTGGTTTCTACATATTTATTTAGTGAACGAAAAGATCAAAAAGTGGATTCTGTAAGGTCTTCACACTCTGCACCTGGGGAACTCATGCATGGCGCACCATCTCCAGTTGAGTCAATTGAGGAAGCAGATTCTTCCTCTGAAACTCCAAAACCATCACAAAGTGATTCACAACTTGAAGTAACACCTCCTCCCCTTCCCACAAAACCTCCATCTCCACATTTACCATCACTCCCCAGGGCAAATGCAATACCTCCTCCACCTCCTCCACCACCCCCATCCTTGCACCATATGGAGTCGACATACTCTGTTCCACCACTTTCTGTGTCTTTAGCACCACCACCCATTGCTAACTCATCAAAGGCAGCGACTCCCCCTCTCCCTCCCCCTCCTCCATTCAGTAGGCAGAACAGTGAGATGCTTTTGCCCATTTCTTCTACACAGTCATCATGGGAGCAAAGATATTCTTCTGTTTCTAGTGTAAAGGTGGCTGGTTCTGTACCTCCTCCACCTGCACCCCCATCTCGACCTCGACCTCACTCTCTGGCCATGCCATCTACATTAAAGAATATTGCAAGTATTCCTCGTGTACCTGTTGTATCTCCTCCTTCAGCATTTCTTTCATTGGCATATAAAGGTATTTTGCTATCATCACCCCCACCTCCCCCTCTTTCTAGGATACATGAACTACTTGCTCCACCATCTTCACCACACCTGCCTGCTCCAATATGTGGTGGTAAAACACCCCCACCTATTACTTCAGTTCATAGTGCACCCCCACCCCCATCAATGCAAGGGGCACTTCCTTCACCATCTCCAGGGGAAGGAACTCCACCCCCACCCACGCATGGTGTATCTCCAACACTACCTTTATTACATGGAGCACCACAGCCTCCCTCACCACCTCCTCCCCCACCACCTTCAATTTATGGAGCACCTCCTCCTCCACCCCTTCCAATGTTTGGAGCACCCCCTCCTTTGATCCCTCCCATGCAAATGCAGAGGAGACCTCCAACACCTCCTCCATCGCCTCCAATGCATGGGTCTCCTCCACCAATGAATGCAACTCCACCGCCTCCCATACGTGGGGCTTCTCCACCACCCCCACCTCCACTAATGCATGTGGCTCCTCTACCATCGCCACCGCCACCAATGCTTGGGAATCCTCCTCCACCTCCACCTCCACCTCCACCAATGCACGGGAATCCTCCACCACCCCTGCCACCTCCACCAATGCATGGTGCTCCTCCACCACCCCCGCCACCTCCACCAATGCATGGGAATCCTCCACCACCCTCGCCACCTCCACCAATGCATGGTACTCCGCCACCACCCTCGCCACCTCCACCAATGCATGGGAATCCTCCACCACCTACCCCTCCACCCCCACCGCCACCCTCAGCCGGGGATGGTGGAGCCCCTCCACCACCTCCGCCACCCGGGGGTGGTGGAGTCCCCGTACCCCCTCCGCCACCCTGGGGTGGTGGAGCTCCCGCACCCCCTCCGCCACCCTGGGGTGGTGGAGCTCCCGCACCCCCTCCGCCACCCTGGGGTGGTGGGGCTCCCCCACCTCCTCCACCACCTGGGGGTGGTGGGGCTCCCCCACCCCCTCCACCACCTGGGGGCGGTGGAGCTCCTGCACCCCCTCCTCCTCCAGGTGGTCATGCTCCAGCCCCACCTGGACCTCCAGGTGGTGGACCTCCTCCACCTCCACCACTAGGTTCAAAAGGAGGAGCTGTTGCACCTCCTGACCCAAGAGGTTTGTCTGCTGGAAGGGGGCGTGGGCTAACACGCTCAGCTACTACTGCACCTCGAAGGTCCTCCTTGAAGCCTCTACATTGGAGCAAGGTTACAAGAGCTCTGCAAGGGAGCTTATGGGAAGAACTACAGAGATATGGCGAGACTCAAATGTATTTTGAATTCTCTTTTTATGTATCTTGCCGATTTGAATTGAAATTAATCCAGTCTTCCAAGAGGATATTTCTCAGTACTTTTAATGATTTTATGCTGTTTGCTTCTTATTGGTGCTTCCTTTTCCTCCCTCTCCTCAGTGCATCAGAGTTTGATGTGACCGAGATAGAGACTCTCTTTTCTGCAACTGTTCCCAAACCTGCTGATGGAGGCAAATCTCGAAGGAAGTCTGCTGGATCCAAAACTGACAAAGTTCATCTGATTGACCTCAGAAGAGCTAACAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCAATGGACGAATCAGTATTAGACGTTGATCAGGTGGAAAATCTCATAAAGTTTTGTCCTACGAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATAAGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGGGTAGAGTCAAAGATGAAAGTGTTTTCTTTTAAGATTCAGTTCGGCTCTCAGTTATCAGAATTTAAGAAGAGTTTGAATACTGTCAACTCGGCTTGTCATGAGGTTAGGAATTCTGCCAAACTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACACTGAATCAAGGAACGGCGAGGGGTAAGGTCTTGATTACTTGGGGTTCTGCAGTTGGCTTCAAGTTGGACAGTCTTTTAAAGCTTGCTGATACTCGTGCTTCTAATAATAAGATGACGCTCATGCATTATCTTTGCAAGGTCCTTGCTTCGAAGACACCAGCTCTTCTTAAATTTCATTTGGACCTGGGTAGCCTAGAGGCAGCAACCAAGATACAATTGAAGTCTTTAGCGGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAATTTGTTGCTTCTGAAAATGATGGCCCAGTCTCCGAAATTTTTCGAAAGACGTTGAAAGAATTCATTGCTACTGCTGAGACAGAGGCGGCGTCGGTGACAAATCTGTACTCTGTTGTGGGTAGAAATGCAGACGCACTTGCATTATATTTTGGTGAGGACCCGGCTCGTTGTCCATTTGAGCAGGTTATAGTGACATTGTTGAACTTCATGAGATTATTTCGGAAAGCCCACGAAGAGAACTGCAAACAGGCTGAATTGGATAAGAAAAAATCCGATAAGGATGCTGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAGCGTGAAATAG 5076 47.44 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQSHFPDASFMVFNFTEGGKRSQVSDVLSQYDMTVMDYPRQYEGCPLLPLEMVHHFLRSSESWLSLQGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSQLRYLQYISRRNLGSDWPPADTPLVLDCLILRVLPLFDGGKGCRPLVRVYGQDPSIPANRTSKLLFSTSINRKHIRNYQQEECMLVKVDINCHIQGDVVVECIHLDEDLVHEKMMFRVMFHTTFVRSNIIMLNRDEVDVLWDARDQLPKDFRVEALFLGADADVVVPNLTTTFDDEDEYEAGVASPEEFFEVEEIFSNAMDGQEAKGSYHPQLINRADRKADWKEDFDPPAFQDCATDDGNLKHVKKSDFDAVKDIAVDDVKYKLDENIYSDLNAVKDIAVDDGDMNSNSFLVAAANVLTHVKAQGLVDAAYGKVEDNEEKDDGRDAAPAKLENKVLQKKLSADGSRQKSEKLQTPIPKKQPIPSGKPTTDMVSAKQKVKQQETQGFSAKQAKPNAASRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIAPSKDTSANSKTKGAATLDSLVSTYLFSERKDQKVDSVRSSHSAPGELMHGAPSPVESIEEADSSSETPKPSQSDSQLEVTPPPLPTKPPSPHLPSLPRANAIPPPPPPPPPSLHHMESTYSVPPLSVSLAPPPIANSSKAATPPLPPPPPFSRQNSEMLLPISSTQSSWEQRYSSVSSVKVAGSVPPPPAPPSRPRPHSLAMPSTLKNIASIPRVPVVSPPSAFLSLAYKGILLSSPPPPPLSRIHELLAPPSSPHLPAPICGGKTPPPITSVHSAPPPPSMQGALPSPSPGEGTPPPPTHGVSPTLPLLHGAPQPPSPPPPPPPSIYGAPPPPPLPMFGAPPPLIPPMQMQRRPPTPPPSPPMHGSPPPMNATPPPPIRGASPPPPPPLMHVAPLPSPPPPMLGNPPPPPPPPPPMHGNPPPPLPPPPMHGAPPPPPPPPPMHGNPPPPSPPPPMHGTPPPPSPPPPMHGNPPPPTPPPPPPPSAGDGGAPPPPPPPGGGGVPVPPPPPWGGGAPAPPPPPWGGGAPAPPPPPWGGGAPPPPPPPGGGGAPPPPPPPGGGGAPAPPPPPGGHAPAPPGPPGGGPPPPPPLGSKGGAVAPPDPRGLSAGRGRGLTRSATTAPRRSSLKPLHWSKVTRALQGSLWEELQRYGETQMYFEFSFYVSCRFELKLIQSSKRIFLSTFNDFMLFASYWCFLFLPLLSASEFDVTEIETLFSATVPKPADGGKSRRKSAGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKDNLGKCEQYFLELMKVPRVESKMKVFSFKIQFGSQLSEFKKSLNTVNSACHEVRNSAKLKEIMKKILYLGNTLNQGTARGKVLITWGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLKFHLDLGSLEAATKIQLKSLAEEMQAIIKGLEKVRQEFVASENDGPVSEIFRKTLKEFIATAETEAASVTNLYSVVGRNADALALYFGEDPARCPFEQVIVTLLNFMRLFRKAHEENCKQAELDKKKSDKDAEMENAKGISLTKSVK 1691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11754724 11771159 + Cp4.1LG04g14720.1 Cpe04g01480 469042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 518 583 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 669 691 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 638 816 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 692 725 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 1664 1691 - -
Cpe04g01480 1691 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Cpe04g01480 1691 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Cpe04g01480 1691 Coils Coil 1655 1675 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 1664 1681 - -
Cpe04g01480 1691 CDD PTP_PTEN-like 16 190 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 748 765 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 795 809 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 546 571 - -
Cpe04g01480 1691 Gene3D - 205 336 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 730 746 - -
Cpe04g01480 1691 Pfam Formin Homology 2 Domain 1232 1654 IPR015425 -
Cpe04g01480 1691 Coils Coil 1561 1581 - -
Cpe04g01480 1691 SMART PTEN_C2_2 198 1276 IPR014020 -
Cpe04g01480 1691 SMART it6_source 694 1688 IPR015425 -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 767 792 - -
Cpe04g01480 1691 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 851 1237 - -
Cpe04g01480 1691 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1349 1681 - -
Cpe04g01480 1691 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Cpe04g01480 1691 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1228 1680 IPR015425 -
Cpe04g01480 1691 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cpe04g01480 1691 PANTHER FORMIN-J 1066 1684 - -
Cpe04g01480 1691 PANTHER FORMIN-J 1 766 - -
Cpe04g01480 1691 MobiDBLite consensus disorder prediction 864 1207 - -
Cpe04g01480 1691 Gene3D Formin, FH2 domain 1225 1666 IPR042201 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01480 Cpe18g00780 CCT
Cpe04g01480 Cpe20g00055 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01480 Cpe-Chr4:11754724 Cpe06g00297 Cpe-Chr6:1626314 4.34E-156 dispersed
Cpe18g00780 Cpe-Chr18:7393833 Cpe04g01480 Cpe-Chr4:11754724 0 wgd
Cpe02g01046 Cpe-Chr2:9648943 Cpe04g01480 Cpe-Chr4:11754724 2.44E-179 wgd
Cpe20g00055 Cpe-Chr20:268773 Cpe04g01480 Cpe-Chr4:11754724 4.14E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01480 - - cpep:111792358 1702.57