Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01483 ATGGCCGAGCCTTCTTCGAACAGTTTGCCCGTGGATTCTCTCGGCGACATCGACGACTACATTTCGGCCAATGAAGGAGAGGGTTCATTAACATGGAACATGTTTAGTCATGTTTTTGAATTCGTACAAAACGGGAACCGAGCATTTAGAGATAATAACTTTGAAGAGGCAATCAAGTGTTACTCAAGAGCAAATAACATCAAACCAGGTGATCCGGTTATTCTCAACAACAGAAGTGCTGCTTATATCAGGATTAGTCGATTCCTCAAAGATAGACCACCATCTGCTTCTGAATATCGACCATTGAATGGGTTGGATCCTACAGTACTTGCTGAACTTGCACTAAAAGATGCTGAGAAGCTGATGGACCAATGCAGTAAATCAGTGAAACCATATATTCTGAAGGCTAATGCTCTCATTCTCCTAGAAAAATATGACATAGCAAAGGATATTATTCTATCCGGCCTTCAAATTGACCCTCTAAGCAATCCTCTTCAGGCTTCTCTTCAGAGATTGGAGAGGATAGCTGTGAGTCAGACAGGAAGGGGACGCCATGGGCTACCAGATCGTAGTGATGAATTTGATTGCACCCTTTGTTTTAAGCTTCTTTATGAACCCATCACAACTCCCTGTGGGCATTCTTTTTGCCGTTCTTGCTTATTTCAGTCGATGGATCGTGGTAATAAATGTCCGCTGTGCCGAACAGTTCTTTTTATCAGTTCAAGAACATGTGCAATCAGTGTTACGCTGAGCAACATTATACAGAAGAACTTTCCAGAGGAGTATGCTGAAAGGAAGTCAGAACATGATGGTTTGGCAAATTTTGGGATCGATATAATGCCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTCCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTCCGGAGGGTAATGGAAGGCAATCATCGTATGGGAATGGTAGATGTTGTTATTGTGGATTCTACAACAGGTTCTATCGCTGATTTTGCATGTGAAGTGGAAATTACCGAGTGTGAGCCTCTTGCGGACGGACGATTCTATCTAGAGATTGAAAGTCGTCGAAGATTTCGTATTATTCGATCTTGGGATCAAGATGGGTATCGAGTGGCAGAGATCGAATGGGTCAATGATGTAGCTCCCGCAGAAGGGACAAGAGAGCAAGCAGAATTGCAGGAAATGACAAATAATGCAGCAGAGTACGCTCAGTCATGGATAAGGAAGGCAAAAGAAGCATCTAGACGAGATCATAGCAAACACGATAGACTTCTTAATGTGGAAGCAATGATGCCCTCATCTCGAGATCCTGAACGGTTCAGCTTCTGGCTTGCTACCCTTTCAAATCGGAGGCCCCTGGAAAGATTGGAACTTCTACGAATGACAGATACAAGAGAGAGGATAAGGCGTGGACTTGTATATCTCAAAGCAGAAGAACAGGGGTGTCAGATGCAATGA 1470 43.27 MAEPSSNSLPVDSLGDIDDYISANEGEGSLTWNMFSHVFEFVQNGNRAFRDNNFEEAIKCYSRANNIKPGDPVILNNRSAAYIRISRFLKDRPPSASEYRPLNGLDPTVLAELALKDAEKLMDQCSKSVKPYILKANALILLEKYDIAKDIILSGLQIDPLSNPLQASLQRLERIAVSQTGRGRHGLPDRSDEFDCTLCFKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISSRTCAISVTLSNIIQKNFPEEYAERKSEHDGLANFGIDIMPLFVMDVVIPCQKFPLHIFEPRYRLMVRRVMEGNHRMGMVDVVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRFRIIRSWDQDGYRVAEIEWVNDVAPAEGTREQAELQEMTNNAAEYAQSWIRKAKEASRRDHSKHDRLLNVEAMMPSSRDPERFSFWLATLSNRRPLERLELLRMTDTRERIRRGLVYLKAEEQGCQMQ 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11779610 11790688 - Cp4.1LG04g14930.1 Cpe04g01483 469045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01483 489 Gene3D - 279 383 IPR046336 -
Cpe04g01483 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 274 IPR013083 -
Cpe04g01483 489 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Cpe04g01483 489 Pfam Zinc finger, C3HC4 type (RING finger) 196 233 - -
Cpe04g01483 489 PANTHER RING FINGER PROTEIN 127 3 482 - -
Cpe04g01483 489 SMART ring_2 196 233 IPR001841 -
Cpe04g01483 489 ProSiteProfiles TPR repeat profile. 38 71 IPR019734 GO:0005515
Cpe04g01483 489 ProSiteProfiles Zinc finger RING-type profile. 196 234 IPR001841 -
Cpe04g01483 489 SMART lon_5 279 481 IPR003111 -
Cpe04g01483 489 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 3 482 - -
Cpe04g01483 489 Pfam ATP-dependent protease La (LON) substrate-binding domain 280 480 IPR003111 -
Cpe04g01483 489 SUPERFAMILY TPR-like 39 163 IPR011990 GO:0005515
Cpe04g01483 489 SUPERFAMILY RING/U-box 189 257 - -
Cpe04g01483 489 SUPERFAMILY PUA domain-like 280 479 IPR015947 -
Cpe04g01483 489 Gene3D Tetratricopeptide repeat domain 36 182 IPR011990 GO:0005515
Cpe04g01483 489 Gene3D - 414 481 - -
Cpe04g01483 489 ProSiteProfiles Lon N-terminal domain profile. 277 481 IPR003111 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01483 - - - cpep:111793369 954.896
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00100 Cpe-Chr2:502247 Cpe04g01483 Cpe-Chr4:11779610 2.01E-15 dispersed
Cpe03g00607 Cpe-Chr3:3641038 Cpe04g01483 Cpe-Chr4:11779610 7.84E-17 dispersed
Cpe04g00510 Cpe-Chr4:5635341 Cpe04g01483 Cpe-Chr4:11779610 2.40E-17 dispersed
Cpe04g01483 Cpe-Chr4:11779610 Cpe17g00987 Cpe-Chr17:7498642 7.25E-07 dispersed
Cpe04g01483 Cpe-Chr4:11779610 Cpe06g00088 Cpe-Chr6:437360 9.52E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01483 Cpe_Chr04 FPKM 0.0 0.942661 0.832329 1.185191 2.932031 2.14666 2.741783 1.303907 1.387912 2.095618