Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01485 ATGTGTTTCCTTTTGGGGCGCGAACTTGGAACCCTAATGGGGGAAATGGGTTGCTCCAATACTGAATGTTTTCGGATTTACTCTGTTTTGAACTGGCGTTTTGGGAGTTTTGAGCGGGTTGTGATGATGGAATGCAAAGAGATCAATTGCAACAAGGATTGTGGTGTTGGGGAAAGTAATAGGGGCGGTGGAGGAGCTGGATTTGTTGATAGGAGTAAGCTGAAGATTTTACTGTGCGACAATGACTCCAAGAGTTCACAAGAGGTTTTTACACTTCTTTTGCGATGTTCATATCAGGTACGATCAGCTAGACAGGTGATTAATGCCTTGAATGCTGAGGGACCAGATATAGATATCATTCTAACTGAAGTAGATTTACCTATGGCCAAAGGTATGAAAATGCTCAAATATGTCACGCGGGATAAAGAGCTGCGACGTATTCCTGTGATTATGATGTCAGCGCAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAGGCTCGGAGCAGCGGACTATCTCGTGAAGCCTTTACGAACAAATGAGCTACTAAACTTGTGGACTCACATATGGAGAAGACGGCGCATGCTCGGATTGACAGAGAAGCAAATTTTAAATTTCGACTTTGATTTGGCGACTTCGGATCTTAGTGACCGCAATACAAATAGCACTACTTTTCTCTCAGACGACACCGATGATAACACTCATAGGAGCATTAACCCAGAATTGGACATGCCCCGTCAGGAAGAATTGGACATGCCCCATCAGGAAGATATGTCTGCTGTTGCTGATGCCACTGCCATGGACCCTCCTGCGGCTGATTCATTGCAATTTCAGCCCAACGTGCAATTTATCGATGAAAACCATAACGGCCCTAAAAAGTGTAAACTGAAAATCGGAAAAATCGGAGAGTCCTCTGCCTTCTTTACATATTGCAAACCTAATGCATTGAAAAGCAACTTTCAAGCACCACCTGCTCAACAATTGAGAAGGGAAGAGAACCCTCTATCATCTGAAACTGATCAACTGGTATCTACTGACCATTGTGAAACTGGAAATGCCTGTACAAGTTATTCGCAAGGAGATGGCTGTCGGAGTAGTATTAGTGTTCCTGATTCTTGGTCCATGGAGATGTCTAGCAGTCCCCAAACGTTCCAATTTTCTCAACCAATGAGCCATGATGAAGAAAAGTTATCTCAGGTGGTTGAGCATCCAAGAGACGAGTCTCGACCCGACGTTGCTGGATTACTGACTCAAACAAAGTATCCCTTTTATCTGCCTGGAGGCACGAATCAAGTTTTGATACCGCCGTCTACGGACTTCTACCACTGCAAGAATCAACATGATGGGCAAAATCATGTGACTGCAGCTGCAATGCCACAGTACAAGCTTGGTTATTTCGTCGGACATCGATCGGAGAATAGGGTGTTCGTCCACAGGAGCATACATCGAAGAAATCAAGTTGGTCCCCTGAAAGCCGATTATGAGAAGTTAAGCCGTTGTTCTCCGAGCTCTGTACAATGCAATGCACGCACGCCATGTGTTCGACGATATTCCGCCGAGAATATGCGTCTCAGAATCGCTTATGCTTCCATCACTCCACCGGTTACAATGGAGCTTCTGATCAGGAGAGTGAAGGAATCATGTAGAACCCTTGACATGATGAAACGATCTGGTTTTCGACCCGATTGGGTTGGCTATTATCTTGTGGTGAGAGTTCTGTTCCTGAGTGGAAGGTTTGGGAAAGGGCACGGGATTGTGGACGAGATGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGCTTTGGATCCATCAATCACCGAGGTTTCAAGCCAACAAGAAAGATTAATAGCAAAATTCTCGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGAGAAAACAATAGCAAAGGGAAAGAGAAGGAGAAAAAACATGGGACAAGACAGTATATCGGCGCAGAAGAGAATTGGGAGTGGAGGCAATAGTTTGCCCACCACTGCAGCCACCACCAACGACAGGGGAGGCCGTACGATGCCCGGAATTCCTCGTGGCCGTCAGATCCAGAAGACTTTCAACAATATCAAGATCACAATACTCTGTGGCTTTGTCACCATCCTTGTTCTTCGTGGCACCATCGGCATCGGCAACCTTGGCAGCTCCGAGGCCGACGCTGTAAACCAAAACATCATCGAAGAAACCAACCGGATACTTGCTGAGATTCGATCTGACAGCGACCCCAACGACCCGGATGATCCTGCCGAGACCGAAATCAACCCTAATGCCACTTACACGCTTGGACCCAAGATTGCGAACTGGAATCAGAAGCGAAAGGTTTGGCTTGATCAAAACCCACAATTTCCAAATTATGTTAATAAAAGAGCTAGGATCTTGCTTGTTACTGGTTCTCCTCCAAAACCTTGCGATAACCCAATTGGGGATCATTATTTGTTGAAGGCAATCAAGAATAAGATTGATTATTGCAGGCTTCATGGGATTGAAATAGTATACAATTTGGCTCATTTAGATAAGGAACTTGCTGGGTATTGGGCCAAGTTGCCACTGTTTCGGCGATTGATGTTGTCTCACCCTGAGGTTGAGTGGATTTGGTGGATGGATAGCGATGCTTTATTTACTGATATGGTGTTTGAGATTCCTCTGGAAAAATATGATAACTATAATTTGGTTGTTCATGGATATCCTGATTTGATGTTCAACCAGAAATCCTGGATTGCACTAAACACAGGAAGCTTTTTGTTTCGGAATTGTCAATGGTCTTTGGATTTGCTGGATGCTTGGGCTCCAATGGGACCAAAGGGTCCGATTCGAGACGAGGCTGGCAAGATTTTAACTGCATACTTGAAGGGCAGGCCAGCATTTGAGGCTGATGATCAGTCAGCTTTGATATACCTATTGCTTTCTCAGAAAGATCAATGGATGGATAAGGTGTTTCTTGAGAATTCATACTATTTGCATGGTTATTGGGCTGGATTAGTCGATAGGTACGAGGAAATGATCGAGAAGTATCACCCTGGATTAGGCGACGAAAGGTGGCCATTCGTGACGCATTTTGTTGGTTGCAAGCCTTGTGGTAGCTATGGAGATTATCCAGTTGAAAGGTGCTTGAGTAGCATGGAGAGGGCTTTTAATTTTGCTGACAATCAGGTGCTCAACCTGTATGGATTTCGCCATAGGGGCCTTTTGAGCCCCAAGATCAAGCGAATCAGGAACGAGACAGCCACTCCATTGGAGTCGTTGAAAGAGTAG 3297 45.28 MCFLLGRELGTLMGEMGCSNTECFRIYSVLNWRFGSFERVVMMECKEINCNKDCGVGESNRGGGGAGFVDRSKLKILLCDNDSKSSQEVFTLLLRCSYQVRSARQVINALNAEGPDIDIILTEVDLPMAKGMKMLKYVTRDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHIWRRRRMLGLTEKQILNFDFDLATSDLSDRNTNSTTFLSDDTDDNTHRSINPELDMPRQEELDMPHQEDMSAVADATAMDPPAADSLQFQPNVQFIDENHNGPKKCKLKIGKIGESSAFFTYCKPNALKSNFQAPPAQQLRREENPLSSETDQLVSTDHCETGNACTSYSQGDGCRSSISVPDSWSMEMSSSPQTFQFSQPMSHDEEKLSQVVEHPRDESRPDVAGLLTQTKYPFYLPGGTNQVLIPPSTDFYHCKNQHDGQNHVTAAAMPQYKLGYFVGHRSENRVFVHRSIHRRNQVGPLKADYEKLSRCSPSSVQCNARTPCVRRYSAENMRLRIAYASITPPVTMELLIRRVKESCRTLDMMKRSGFRPDWVGYYLVVRVLFLSGRFGKGHGIVDEMATVGGGHGYGSQAWVLSEALDPSITEVSSQQERLIAKFSRNTTEAEKQNEAATEKTIAKGKRRRKNMGQDSISAQKRIGSGGNSLPTTAATTNDRGGRTMPGIPRGRQIQKTFNNIKITILCGFVTILVLRGTIGIGNLGSSEADAVNQNIIEETNRILAEIRSDSDPNDPDDPAETEINPNATYTLGPKIANWNQKRKVWLDQNPQFPNYVNKRARILLVTGSPPKPCDNPIGDHYLLKAIKNKIDYCRLHGIEIVYNLAHLDKELAGYWAKLPLFRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAYLKGRPAFEADDQSALIYLLLSQKDQWMDKVFLENSYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLNLYGFRHRGLLSPKIKRIRNETATPLESLKE 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11795729 11803152 - Cp4.1LG04g14980.1 Cpe04g01485 469047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01485 1098 Coils Coil 624 644 - -
Cpe04g01485 1098 Pfam galactosyl transferase GMA12/MNN10 family 804 1042 IPR008630 GO:0016021|GO:0016757
Cpe04g01485 1098 SMART REC_2 74 186 IPR001789 GO:0000160
Cpe04g01485 1098 MobiDBLite consensus disorder prediction 751 771 - -
Cpe04g01485 1098 MobiDBLite consensus disorder prediction 660 684 - -
Cpe04g01485 1098 SUPERFAMILY CheY-like 70 197 IPR011006 -
Cpe04g01485 1098 Pfam Response regulator receiver domain 76 184 IPR001789 GO:0000160
Cpe04g01485 1098 MobiDBLite consensus disorder prediction 630 659 - -
Cpe04g01485 1098 ProSiteProfiles Response regulatory domain profile. 75 190 IPR001789 GO:0000160
Cpe04g01485 1098 MobiDBLite consensus disorder prediction 219 242 - -
Cpe04g01485 1098 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 803 949 IPR029044 -
Cpe04g01485 1098 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 3-RELATED 668 1094 - -
Cpe04g01485 1098 MobiDBLite consensus disorder prediction 372 391 - -
Cpe04g01485 1098 Gene3D - 73 286 - -
Cpe04g01485 1098 MobiDBLite consensus disorder prediction 630 695 - -
Cpe04g01485 1098 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 668 1094 IPR008630 GO:0016021|GO:0016757
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01485 Cpe-Chr4:11795729 Cpe18g00781 Cpe-Chr18:7409455 0 dispersed
Cpe04g01484 Cpe-Chr4:11793118 Cpe04g01485 Cpe-Chr4:11795729 0 tandem
Cpe02g01049 Cpe-Chr2:9664362 Cpe04g01485 Cpe-Chr4:11795729 2.80E-136 wgd
Cpe20g00010 Cpe-Chr20:65704 Cpe04g01485 Cpe-Chr4:11795729 3.60E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49439 PF05637 Glyco_transf_34 6.70E-69 CL0110 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01485 K08238 - csv:101204112 872.078