Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01485 | ATGTGTTTCCTTTTGGGGCGCGAACTTGGAACCCTAATGGGGGAAATGGGTTGCTCCAATACTGAATGTTTTCGGATTTACTCTGTTTTGAACTGGCGTTTTGGGAGTTTTGAGCGGGTTGTGATGATGGAATGCAAAGAGATCAATTGCAACAAGGATTGTGGTGTTGGGGAAAGTAATAGGGGCGGTGGAGGAGCTGGATTTGTTGATAGGAGTAAGCTGAAGATTTTACTGTGCGACAATGACTCCAAGAGTTCACAAGAGGTTTTTACACTTCTTTTGCGATGTTCATATCAGGTACGATCAGCTAGACAGGTGATTAATGCCTTGAATGCTGAGGGACCAGATATAGATATCATTCTAACTGAAGTAGATTTACCTATGGCCAAAGGTATGAAAATGCTCAAATATGTCACGCGGGATAAAGAGCTGCGACGTATTCCTGTGATTATGATGTCAGCGCAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAGGCTCGGAGCAGCGGACTATCTCGTGAAGCCTTTACGAACAAATGAGCTACTAAACTTGTGGACTCACATATGGAGAAGACGGCGCATGCTCGGATTGACAGAGAAGCAAATTTTAAATTTCGACTTTGATTTGGCGACTTCGGATCTTAGTGACCGCAATACAAATAGCACTACTTTTCTCTCAGACGACACCGATGATAACACTCATAGGAGCATTAACCCAGAATTGGACATGCCCCGTCAGGAAGAATTGGACATGCCCCATCAGGAAGATATGTCTGCTGTTGCTGATGCCACTGCCATGGACCCTCCTGCGGCTGATTCATTGCAATTTCAGCCCAACGTGCAATTTATCGATGAAAACCATAACGGCCCTAAAAAGTGTAAACTGAAAATCGGAAAAATCGGAGAGTCCTCTGCCTTCTTTACATATTGCAAACCTAATGCATTGAAAAGCAACTTTCAAGCACCACCTGCTCAACAATTGAGAAGGGAAGAGAACCCTCTATCATCTGAAACTGATCAACTGGTATCTACTGACCATTGTGAAACTGGAAATGCCTGTACAAGTTATTCGCAAGGAGATGGCTGTCGGAGTAGTATTAGTGTTCCTGATTCTTGGTCCATGGAGATGTCTAGCAGTCCCCAAACGTTCCAATTTTCTCAACCAATGAGCCATGATGAAGAAAAGTTATCTCAGGTGGTTGAGCATCCAAGAGACGAGTCTCGACCCGACGTTGCTGGATTACTGACTCAAACAAAGTATCCCTTTTATCTGCCTGGAGGCACGAATCAAGTTTTGATACCGCCGTCTACGGACTTCTACCACTGCAAGAATCAACATGATGGGCAAAATCATGTGACTGCAGCTGCAATGCCACAGTACAAGCTTGGTTATTTCGTCGGACATCGATCGGAGAATAGGGTGTTCGTCCACAGGAGCATACATCGAAGAAATCAAGTTGGTCCCCTGAAAGCCGATTATGAGAAGTTAAGCCGTTGTTCTCCGAGCTCTGTACAATGCAATGCACGCACGCCATGTGTTCGACGATATTCCGCCGAGAATATGCGTCTCAGAATCGCTTATGCTTCCATCACTCCACCGGTTACAATGGAGCTTCTGATCAGGAGAGTGAAGGAATCATGTAGAACCCTTGACATGATGAAACGATCTGGTTTTCGACCCGATTGGGTTGGCTATTATCTTGTGGTGAGAGTTCTGTTCCTGAGTGGAAGGTTTGGGAAAGGGCACGGGATTGTGGACGAGATGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGCTTTGGATCCATCAATCACCGAGGTTTCAAGCCAACAAGAAAGATTAATAGCAAAATTCTCGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGAGAAAACAATAGCAAAGGGAAAGAGAAGGAGAAAAAACATGGGACAAGACAGTATATCGGCGCAGAAGAGAATTGGGAGTGGAGGCAATAGTTTGCCCACCACTGCAGCCACCACCAACGACAGGGGAGGCCGTACGATGCCCGGAATTCCTCGTGGCCGTCAGATCCAGAAGACTTTCAACAATATCAAGATCACAATACTCTGTGGCTTTGTCACCATCCTTGTTCTTCGTGGCACCATCGGCATCGGCAACCTTGGCAGCTCCGAGGCCGACGCTGTAAACCAAAACATCATCGAAGAAACCAACCGGATACTTGCTGAGATTCGATCTGACAGCGACCCCAACGACCCGGATGATCCTGCCGAGACCGAAATCAACCCTAATGCCACTTACACGCTTGGACCCAAGATTGCGAACTGGAATCAGAAGCGAAAGGTTTGGCTTGATCAAAACCCACAATTTCCAAATTATGTTAATAAAAGAGCTAGGATCTTGCTTGTTACTGGTTCTCCTCCAAAACCTTGCGATAACCCAATTGGGGATCATTATTTGTTGAAGGCAATCAAGAATAAGATTGATTATTGCAGGCTTCATGGGATTGAAATAGTATACAATTTGGCTCATTTAGATAAGGAACTTGCTGGGTATTGGGCCAAGTTGCCACTGTTTCGGCGATTGATGTTGTCTCACCCTGAGGTTGAGTGGATTTGGTGGATGGATAGCGATGCTTTATTTACTGATATGGTGTTTGAGATTCCTCTGGAAAAATATGATAACTATAATTTGGTTGTTCATGGATATCCTGATTTGATGTTCAACCAGAAATCCTGGATTGCACTAAACACAGGAAGCTTTTTGTTTCGGAATTGTCAATGGTCTTTGGATTTGCTGGATGCTTGGGCTCCAATGGGACCAAAGGGTCCGATTCGAGACGAGGCTGGCAAGATTTTAACTGCATACTTGAAGGGCAGGCCAGCATTTGAGGCTGATGATCAGTCAGCTTTGATATACCTATTGCTTTCTCAGAAAGATCAATGGATGGATAAGGTGTTTCTTGAGAATTCATACTATTTGCATGGTTATTGGGCTGGATTAGTCGATAGGTACGAGGAAATGATCGAGAAGTATCACCCTGGATTAGGCGACGAAAGGTGGCCATTCGTGACGCATTTTGTTGGTTGCAAGCCTTGTGGTAGCTATGGAGATTATCCAGTTGAAAGGTGCTTGAGTAGCATGGAGAGGGCTTTTAATTTTGCTGACAATCAGGTGCTCAACCTGTATGGATTTCGCCATAGGGGCCTTTTGAGCCCCAAGATCAAGCGAATCAGGAACGAGACAGCCACTCCATTGGAGTCGTTGAAAGAGTAG | 3297 | 45.28 | MCFLLGRELGTLMGEMGCSNTECFRIYSVLNWRFGSFERVVMMECKEINCNKDCGVGESNRGGGGAGFVDRSKLKILLCDNDSKSSQEVFTLLLRCSYQVRSARQVINALNAEGPDIDIILTEVDLPMAKGMKMLKYVTRDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHIWRRRRMLGLTEKQILNFDFDLATSDLSDRNTNSTTFLSDDTDDNTHRSINPELDMPRQEELDMPHQEDMSAVADATAMDPPAADSLQFQPNVQFIDENHNGPKKCKLKIGKIGESSAFFTYCKPNALKSNFQAPPAQQLRREENPLSSETDQLVSTDHCETGNACTSYSQGDGCRSSISVPDSWSMEMSSSPQTFQFSQPMSHDEEKLSQVVEHPRDESRPDVAGLLTQTKYPFYLPGGTNQVLIPPSTDFYHCKNQHDGQNHVTAAAMPQYKLGYFVGHRSENRVFVHRSIHRRNQVGPLKADYEKLSRCSPSSVQCNARTPCVRRYSAENMRLRIAYASITPPVTMELLIRRVKESCRTLDMMKRSGFRPDWVGYYLVVRVLFLSGRFGKGHGIVDEMATVGGGHGYGSQAWVLSEALDPSITEVSSQQERLIAKFSRNTTEAEKQNEAATEKTIAKGKRRRKNMGQDSISAQKRIGSGGNSLPTTAATTNDRGGRTMPGIPRGRQIQKTFNNIKITILCGFVTILVLRGTIGIGNLGSSEADAVNQNIIEETNRILAEIRSDSDPNDPDDPAETEINPNATYTLGPKIANWNQKRKVWLDQNPQFPNYVNKRARILLVTGSPPKPCDNPIGDHYLLKAIKNKIDYCRLHGIEIVYNLAHLDKELAGYWAKLPLFRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAYLKGRPAFEADDQSALIYLLLSQKDQWMDKVFLENSYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLNLYGFRHRGLLSPKIKRIRNETATPLESLKE | 1098 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11795729 | 11803152 | - | Cp4.1LG04g14980.1 | Cpe04g01485 | 469047 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01485 | 1098 | Coils | Coil | 624 | 644 | - | - | |
Cpe04g01485 | 1098 | Pfam | galactosyl transferase GMA12/MNN10 family | 804 | 1042 | IPR008630 | GO:0016021|GO:0016757 | |
Cpe04g01485 | 1098 | SMART | REC_2 | 74 | 186 | IPR001789 | GO:0000160 | |
Cpe04g01485 | 1098 | MobiDBLite | consensus disorder prediction | 751 | 771 | - | - | |
Cpe04g01485 | 1098 | MobiDBLite | consensus disorder prediction | 660 | 684 | - | - | |
Cpe04g01485 | 1098 | SUPERFAMILY | CheY-like | 70 | 197 | IPR011006 | - | |
Cpe04g01485 | 1098 | Pfam | Response regulator receiver domain | 76 | 184 | IPR001789 | GO:0000160 | |
Cpe04g01485 | 1098 | MobiDBLite | consensus disorder prediction | 630 | 659 | - | - | |
Cpe04g01485 | 1098 | ProSiteProfiles | Response regulatory domain profile. | 75 | 190 | IPR001789 | GO:0000160 | |
Cpe04g01485 | 1098 | MobiDBLite | consensus disorder prediction | 219 | 242 | - | - | |
Cpe04g01485 | 1098 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 803 | 949 | IPR029044 | - | |
Cpe04g01485 | 1098 | PANTHER | XYLOGLUCAN 6-XYLOSYLTRANSFERASE 3-RELATED | 668 | 1094 | - | - | |
Cpe04g01485 | 1098 | MobiDBLite | consensus disorder prediction | 372 | 391 | - | - | |
Cpe04g01485 | 1098 | Gene3D | - | 73 | 286 | - | - | |
Cpe04g01485 | 1098 | MobiDBLite | consensus disorder prediction | 630 | 695 | - | - | |
Cpe04g01485 | 1098 | PANTHER | XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED | 668 | 1094 | IPR008630 | GO:0016021|GO:0016757 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01485 | Cpe-Chr4:11795729 | Cpe18g00781 | Cpe-Chr18:7409455 | 0 | dispersed | |
Cpe04g01484 | Cpe-Chr4:11793118 | Cpe04g01485 | Cpe-Chr4:11795729 | 0 | tandem | |
Cpe02g01049 | Cpe-Chr2:9664362 | Cpe04g01485 | Cpe-Chr4:11795729 | 2.80E-136 | wgd | |
Cpe20g00010 | Cpe-Chr20:65704 | Cpe04g01485 | Cpe-Chr4:11795729 | 3.60E-130 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49439 | PF05637 | Glyco_transf_34 | 6.70E-69 | CL0110 | Cpe | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01485 | K08238 | - | csv:101204112 | 872.078 |