Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01489 ATGAACGTTATAAATATTTTTGGTAATAAAGTAAATTCGAGGGGAAGGACAGCTGCGAAAATTTCGAAAAGTGATTGGGCCGGCTCAGCCCAGTCCATCATCGGGATTTCCGGACTGAAATCTCATTGCAAGTTGCAATTTCGCGCAGGAACGGATCATCGTTTTCCCTGCTCCCGCCATACATCAAAACCGGCGGTGCCGGCGTTCTCAATGGCCTCGACAATCAAAGCCTACTCCGTGCCGTTGATTCTCTTTTCCGTAGCCGTGTTTTATCAGCTTGTTGTTATTCCTACCTCCTTCCCTACCTCACATTACGACGTTTTGGGAATTAAGAGGTATAGTCCCGTTGATGAAGTGAAAGAAGCATACGAAAAGCTCTCAGCCAAGTGGGATCCAGGACTTGAAGTTCCCAAGGCTGTCGATTTTATAAAGGTTCAATATGCTTATGAATTGCTAAAAAACAATTTATGGAAACGTAATTATGATCTTTTTGGCATCGATGAACAACAGGGTGTTCTTGAAAAGGTCAAAGTGCAATATGCAGGAAAAAAGTTTTCAGAAATAAGTCTTCCATTGTTAGATGAAGTTGCTTTAAGTGAGTTCCATTTACAATCATTACAGCTTCTAATAATTATCGTTATTTATTACTCATCTAGAACTGACACGAGTATTATTCTGAAGCAAGCATTCAAGTTAGTTTGCTTGCATTCTTTCCACTCTCTTGAATTTTATCCGTTCTGGCTTATTAATATTAGAGTTAACATGGTGCACTCAGCCAACTTGTATTCATTTGGAAGCAAACTCTGCGCCCAATTTTCTGATGTTTGGAAAAGAATTGTTACTTTGCTGGATGGAGTTGCTAATACTGCAGTAGTGGAGCTTGGACTACCATCACTTGTTGCTTTTCCACTCGGTTGTAAATCAGTTGATTGCATTAATAGGTTCGGTGGGGAGCTTTCTGCTGATGATATTACAGATTGGGTTGCAACAACTATACTGCATCTACCTCGAATTCTTTACTACTCAAAGGACACATTGGGACAAAACTTTTTGGCAAAGAGTAGTCCCCATAAGGTCAAAGTTATTATTTTCTCAGAAACTGGAGAACGTGCTGTACCATTCATACGTCAAACTGCTAAGAACTACTGGGATTCAGTTTCATTTGCCTTTGTGCTTTGGCGAGAAGAGGATTCATCTGTCTGGTTGGATGCGTTTGGGGTGGAAGTTGCACCTGCTATGATATTCTTGAAAGATCCAGGGGTGAAGCCTATTGTGCACCATGCAATTCCTCAATTAAGAAGTCGGACATCAATGGAGCTGGGATGCGATGCTCGTGGTTATTCTCGTGCTGGATCTGACACATCGACGTGGTACTGTGCTATTATAGCTGGAAGACTGGGTACAGAACTCAACAAAATGCGTGAAACCATACGCAGGGTTAAAGAAACTTTAACTACTGATAGTGAAGCTTACGAAGCTGATGAAGGCCCAATGGTATCTCCAGCTGCAGTTGCACTAAAAGGCAAACGTTTGTCCTTCACTTGGCTTGATGGTGAAGCCCAAAAGAAATATTGTTTCTTTTACATCAGTTCCGAATCTAGCTATGAAACTTGTGGACCAAGGAGAGATCTCAGTGATGTGCCTCAATTATTTATTGTGCGGTATAAAAGGGATGCGACTAAAGCAAAGGAGATAAAGCCAAAAAGTGTATTTGATACATCGTCCGAGGATCTGGATCTCGCCGCACAGCTCGTGGCCCTTTACAATGGTTCATCTGAGATTTCAGAGATTGTTCAGTGGATCTCTAAAATAATCGACGATGGCGATTCAAAGGATCTACCCTTTTATAGAGTGAAGTCTCCTGAACTCGTTCTTGAAGATCCGGAGCCAATGAGGTTTGGACATGCTGGGAGTAGTTTTATAAACAATGTGTTGAAGTGGATTGCACACATCAAAGTTGCAGTCTATGACCGTCTAGACGACCCAAGAATTGGCCCAGTCTTTTTTCTTGCTTCACTATTGTCCTTCGGCACAATATGGCTGAGGAAGTCTCAACCCACCCTCCCATCGCAACCAGCTAGGCAACCAGACCTCCCAAATGAATCCACTAAACCAAGTCAACCATCTGCTAAGGGAGGAAGCAAAGCTAGAAGAAGAAACCGTTCAAGAACCGCATCAAAAGGTTCTGATTCTGAATAG 2199 42.2 MNVINIFGNKVNSRGRTAAKISKSDWAGSAQSIIGISGLKSHCKLQFRAGTDHRFPCSRHTSKPAVPAFSMASTIKAYSVPLILFSVAVFYQLVVIPTSFPTSHYDVLGIKRYSPVDEVKEAYEKLSAKWDPGLEVPKAVDFIKVQYAYELLKNNLWKRNYDLFGIDEQQGVLEKVKVQYAGKKFSEISLPLLDEVALSEFHLQSLQLLIIIVIYYSSRTDTSIILKQAFKLVCLHSFHSLEFYPFWLINIRVNMVHSANLYSFGSKLCAQFSDVWKRIVTLLDGVANTAVVELGLPSLVAFPLGCKSVDCINRFGGELSADDITDWVATTILHLPRILYYSKDTLGQNFLAKSSPHKVKVIIFSETGERAVPFIRQTAKNYWDSVSFAFVLWREEDSSVWLDAFGVEVAPAMIFLKDPGVKPIVHHAIPQLRSRTSMELGCDARGYSRAGSDTSTWYCAIIAGRLGTELNKMRETIRRVKETLTTDSEAYEADEGPMVSPAAVALKGKRLSFTWLDGEAQKKYCFFYISSESSYETCGPRRDLSDVPQLFIVRYKRDATKAKEIKPKSVFDTSSEDLDLAAQLVALYNGSSEISEIVQWISKIIDDGDSKDLPFYRVKSPELVLEDPEPMRFGHAGSSFINNVLKWIAHIKVAVYDRLDDPRIGPVFFLASLLSFGTIWLRKSQPTLPSQPARQPDLPNESTKPSQPSAKGGSKARRRNRSRTASKGSDSE 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11814248 11827468 - Cp4.1LG04g14950.1 Cpe04g01489 469051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01489 732 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 16 84 706 - -
Cpe04g01489 732 MobiDBLite consensus disorder prediction 686 732 - -
Cpe04g01489 732 CDD DnaJ 104 154 IPR001623 -
Cpe04g01489 732 Pfam DnaJ domain 104 162 IPR001623 -
Cpe04g01489 732 MobiDBLite consensus disorder prediction 686 710 - -
Cpe04g01489 732 SUPERFAMILY Chaperone J-domain 91 165 IPR036869 -
Cpe04g01489 732 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 16 84 706 - -
Cpe04g01489 732 ProSiteProfiles dnaJ domain profile. 103 165 IPR001623 -
Cpe04g01489 732 Gene3D DnaJ domain 100 182 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01489 - - - csv:101203381 970.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01489 Cpe-Chr4:11814248 Cpe17g00273 Cpe-Chr17:1816187 4.27E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g573 . . . Bda15g00611 . . . . . . . Cma11g00134 . Car11g00162 Sed12g1961 . Cpe04g01489 Bhi02g00302 Tan09g2101 Cmetu10g1617 . Hepe09g0105 . . Cla06g01579 Cam06g1747 Cec06g1805 Cco06g1807 Clacu06g1713 Cmu06g1657 Cre06g2470 . . . Cone19ag0064 . . . . . . . . . . . . . . Cmo11g00178 . . . . . . . . . . . . . . . . . . . . Lsi06g01453 Csa01g00250 Chy02g02484 Cme02g01870
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011601 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01489 Cpe_Chr04 FPKM 6.312743 7.486617 2.823016 2.268974 9.676452 9.776787 10.840936 1.121571 0.755354 1.537209