Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01494 ATGAAGCGAAGGATTGGCGTTCTCAAAGCAAAAGGGCATTTTCACAAACAGGTTGTGGATCATTTGAAGAGGAAAATGGCGTTTCTTGGACCTCTCTTGGTGGGTCTTCTACTCTCTTTGGGATGTGATTCTGTTCTTGCCAACAATGGAGGTTGGATTGATGCCCACGCTACGTTCTACGGTGGGGGCGACGCGGCTGGCACAATGGGAGGAGCTTGTGGCTATGGGAACCTGTACAGCCAAGGGTATGGAACGAACACAGCGGCATTAAGCACAGCCCTGTTCAACAATGGGCTGAGCTGTGGTGCTTGCTTTGAAATCAAGTGCGTAAATGATCCAAAATGGTGTCTTCCAAACTCCATTGTTGTCACTGCCACAAACTTCTGCCCACCAAACAATGCACTCCCCAACAACGCCGGCGGCTGGTGCAATCCGCCCCAGCACCATTTCGACCTCTCCCAGCCCGTCTTCCAGCAAATCGCTCAATTCAAAGCAGGCGTTGTCCCAGTGGCCTACAGAAGGGTGTCTTGTCAGAAGAAAGGAGGCATAAGATTCACAATAAACGGCCATTCTTACTTCAATTTAGTTCTTGTAACGAACGTTGGTGGAGGTGGGGATGTTCATGGGGTATGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGGCAGAACTGGCAGAGCAATTCATATCTGAATGGACAGAGCCTGTCGTTCAAAGTGATCACCGGCGATGGCCGGACGGTGATATCCAATAACGTAGCACCAGCTGGGTGGAGCTTTGGTCAGACTTATAGTGGGCTTCAGTTCCCATGA 828 50.6 MKRRIGVLKAKGHFHKQVVDHLKRKMAFLGPLLVGLLLSLGCDSVLANNGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAQFKAGVVPVAYRRVSCQKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVITGDGRTVISNNVAPAGWSFGQTYSGLQFP 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11841897 11843935 + Cp4.1LG04g14850.1 Cpe04g01494 469056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01494 275 PANTHER EXPANSIN-A15 31 274 IPR002963 GO:0009664
Cpe04g01494 275 Gene3D - 180 274 IPR036749 -
Cpe04g01494 275 SUPERFAMILY Barwin-like endoglucanases 51 200 IPR036908 -
Cpe04g01494 275 Gene3D - 39 178 IPR036908 -
Cpe04g01494 275 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Cpe04g01494 275 PRINTS Expansin signature 109 120 IPR002963 GO:0009664
Cpe04g01494 275 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Cpe04g01494 275 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Cpe04g01494 275 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Cpe04g01494 275 PRINTS Expansin signature 257 273 IPR002963 GO:0009664
Cpe04g01494 275 PRINTS Expansin signature 82 96 IPR002963 GO:0009664
Cpe04g01494 275 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Cpe04g01494 275 PRINTS Expansin signature 228 249 IPR002963 GO:0009664
Cpe04g01494 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 182 IPR007112 -
Cpe04g01494 275 Pfam Expansin C-terminal domain 183 260 IPR007117 -
Cpe04g01494 275 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Cpe04g01494 275 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Cpe04g01494 275 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Cpe04g01494 275 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Cpe04g01494 275 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Cpe04g01494 275 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Cpe04g01494 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 271 IPR007117 -
Cpe04g01494 275 Pfam Lytic transglycolase 87 172 IPR009009 -
Cpe04g01494 275 PANTHER EXPANSIN 31 274 - -
Cpe04g01494 275 SUPERFAMILY PHL pollen allergen 179 270 IPR036749 -
Cpe04g01494 275 SMART dpbb_1 87 172 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00990 Cpe-Chr1:5865470 Cpe04g01494 Cpe-Chr4:11841897 3.00E-74 dispersed
Cpe02g01346 Cpe-Chr2:11913145 Cpe04g01494 Cpe-Chr4:11841897 1.61E-129 dispersed
Cpe04g01494 Cpe-Chr4:11841897 Cpe13g01039 Cpe-Chr13:8521044 2.61E-132 dispersed
Cpe19g00348 Cpe-Chr19:3058720 Cpe04g01494 Cpe-Chr4:11841897 6.28E-71 dispersed
Cpe01g01474 Cpe-Chr1:8805796 Cpe04g01494 Cpe-Chr4:11841897 3.32E-80 wgd
Cpe13g00956 Cpe-Chr13:8016994 Cpe04g01494 Cpe-Chr4:11841897 2.21E-72 wgd
Cpe18g00787 Cpe-Chr18:7441911 Cpe04g01494 Cpe-Chr4:11841897 1.13E-86 wgd
Cpe04g01494 Cpe-Chr4:11841897 Cpe09g00189 Cpe-Chr9:1092462 8.93E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01494 - K20628 csv:101222936 455.677