Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01497 ATGCCAGCAGAGACTCCCAATATCCAATTCCTCTTTATTTATTTATATTTTTTTCTTTTCACTTTCATCTTCTTTTGGTCTTCAAAAATGATGGAGATTAAGGACTCTGCCATTAGAATTTTCGGCAAGGAGATTCCGCTTCCGGCCGACTCTGAAGCTCCGTTGATGGAAAGCGATGATTCGGATTCAAGCTCCGAGAAAGAAAATCGAGACGGAGCAGTAGAAAAGCATGCAATTGTAGGAAAAGCCGCCGAGAGTTCAGCTGCAAAAGAGGAAACTCTTCATGATTCAGAGGATTATGCATGTGTAAAAACAGCAAATGAGGTGCACATGAATCCTGAAGTTTTATCAGCTGATGAAAATGATAAGCTCGCAGCAAGCAAAACTGAGAAAGAGCAGAATGATGCCCCCAACTCGAAAGAGAAACTGAAGAAACCAGATAAGATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTATAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATCAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCAGCCTCACACTACCAACACATTACAATCTCAGAGGCTCTTCGAGCTGCACAAATTGATGTTCCCATTGAGGTCAACCACCTAGCATCAAAAGGCAATGGACGAGTCCTCAATTTCAGTGTAAGCGCACCTGTATGTGAATCTATGGTCAATGTATCACATCCTGCAGAAAGAAAGGTCTTGAATGGAACAAGGAATGAATTTGAGGGAGCCAAAGGACCTTGTGAGGGTGGGGAAACTGGTGATGATTGTTCTAGTGCATCTTCAGTAACAATGTCAAGCTCAATGGAGAATGGAGCCAGGGGGTTCCCTCAAGAACCACAGATGCAGAACATCAATGGTTTTCCTTCTCAAATCCCATGTCTTCCTGGTGTTCCTTGGCCTTGTTCATGGACTGCACCAATACCTCCACCAGCCTTCTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGTTGCAGTGCTCCAGGTTCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTCCTCCAATCCCTGGTCCAAATTCTCCGACGCTAGGGAAGCATTCGAGAGACGGCGACGAACTCCAGGCTGATAATTCCGAGATGGAAAATCCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGATCCAAACGAAGCTGCTAAGAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCAATCAAAGCTGTTGATCTGTCTAATGTTTTCCAATCAAAGGGCGACCAAAAGAGTAACGTTTCTGAAGTGTTGTCTCCAGTTTTGCAAGCCAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCACGAGCGGTCGTGA 1473 43.99 MPAETPNIQFLFIYLYFFLFTFIFFWSSKMMEIKDSAIRIFGKEIPLPADSEAPLMESDDSDSSSEKENRDGAVEKHAIVGKAAESSAAKEETLHDSEDYACVKTANEVHMNPEVLSADENDKLAASKTEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTIRNVPVGAGRRKNKNSASHYQHITISEALRAAQIDVPIEVNHLASKGNGRVLNFSVSAPVCESMVNVSHPAERKVLNGTRNEFEGAKGPCEGGETGDDCSSASSVTMSSSMENGARGFPQEPQMQNINGFPSQIPCLPGVPWPCSWTAPIPPPAFCPPGVPLSFYPATYWSCSAPGSWNIPWFTPQPCPPIPGPNSPTLGKHSRDGDELQADNSEMENPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSNVFQSKGDQKSNVSEVLSPVLQANPAALSRSLTFHERS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11852184 11855292 - Cp4.1LG04g14900.1 Cpe04g01497 469059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01497 490 PANTHER CYCLIC DOF FACTOR 1 30 489 - -
Cpe04g01497 490 MobiDBLite consensus disorder prediction 51 74 - -
Cpe04g01497 490 ProSiteProfiles Zinc finger Dof-type profile. 150 204 IPR003851 GO:0003677|GO:0006355
Cpe04g01497 490 PANTHER CYCLIC DOF FACTOR 2 30 489 IPR045174 GO:0003700|GO:0006355
Cpe04g01497 490 MobiDBLite consensus disorder prediction 286 304 - -
Cpe04g01497 490 MobiDBLite consensus disorder prediction 378 416 - -
Cpe04g01497 490 ProSitePatterns Zinc finger Dof-type signature. 152 188 IPR003851 GO:0003677|GO:0006355
Cpe04g01497 490 MobiDBLite consensus disorder prediction 275 304 - -
Cpe04g01497 490 Pfam Dof domain, zinc finger 147 204 IPR003851 GO:0003677|GO:0006355
Cpe04g01497 490 MobiDBLite consensus disorder prediction 125 146 - -
Cpe04g01497 490 MobiDBLite consensus disorder prediction 60 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01497 - - - cmax:111471198 894.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01497 Cpe18g00789 CCT
Cpe04g01497 Cpe18g00789 ECH
Cpe04g01497 Cpe20g00016 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00467 Cpe-Chr3:2700951 Cpe04g01497 Cpe-Chr4:11852184 5.74E-65 dispersed
Cpe04g01497 Cpe-Chr4:11852184 Cpe08g00683 Cpe-Chr8:5134313 2.83E-60 dispersed
Cpe01g01472 Cpe-Chr1:8794573 Cpe04g01497 Cpe-Chr4:11852184 7.17E-55 wgd
Cpe18g00789 Cpe-Chr18:7448845 Cpe04g01497 Cpe-Chr4:11852184 0 wgd
Cpe02g01058 Cpe-Chr2:9712224 Cpe04g01497 Cpe-Chr4:11852184 1.08E-123 wgd
Cpe20g00016 Cpe-Chr20:95532 Cpe04g01497 Cpe-Chr4:11852184 2.39E-114 wgd
Cpe04g01497 Cpe-Chr4:11852184 Cpe09g00184 Cpe-Chr9:1063668 6.80E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 3.2e-45 178.7
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.6e-39 159.1
Cpe10g00145 CCT,CST 21 158 C2C2-Dof Transcription Factor Family AT1G29160 54.9 1.1e-37 153.7
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 1.8e-45 179.5
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT2G34140 50.9 8.1e-38 154.1
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT2G37590 67.4 8.9e-41 164.9
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.4
Cpe02g01240 . 57 131 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 59.6 1.7e-36 150.6
Cpe20g00813 CST 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Cpe04g01497 CCT,CST,ECH 143 489 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.2e-83 307.8
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT5G02460 66.7 5.9e-39 159.1
Cpe20g00813 CST 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Cpe02g01240 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 61.2 8.5e-38 155.2
Cpe10g00881 CCT,CST,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 63.9 2.7e-36 150.2
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.7e-36 150.2
Cpe10g00881 CCT,CST,ECH 19 128 C2C2-Dof Transcription Factor Family AT3G55370 65.5 1.1e-36 151.4
Cpe04g01443 CCT,CST 26 313 C2C2-Dof Transcription Factor Family AT5G60850 52.3 1.4e-48 190.7
Cpe18g00719 CCT 26 318 C2C2-Dof Transcription Factor Family AT5G60850 53.7 2.0e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49441 PF02701 zf-Dof 2.00E-32 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01497 Cpe_Chr04 FPKM 32.173756 32.250648 6.430981 5.501615 2.063855 1.706719 2.388041 5.687436 4.81366 5.856074