Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01497 ATGCCAGCAGAGACTCCCAATATCCAATTCCTCTTTATTTATTTATATTTTTTTCTTTTCACTTTCATCTTCTTTTGGTCTTCAAAAATGATGGAGATTAAGGACTCTGCCATTAGAATTTTCGGCAAGGAGATTCCGCTTCCGGCCGACTCTGAAGCTCCGTTGATGGAAAGCGATGATTCGGATTCAAGCTCCGAGAAAGAAAATCGAGACGGAGCAGTAGAAAAGCATGCAATTGTAGGAAAAGCCGCCGAGAGTTCAGCTGCAAAAGAGGAAACTCTTCATGATTCAGAGGATTATGCATGTGTAAAAACAGCAAATGAGGTGCACATGAATCCTGAAGTTTTATCAGCTGATGAAAATGATAAGCTCGCAGCAAGCAAAACTGAGAAAGAGCAGAATGATGCCCCCAACTCGAAAGAGAAACTGAAGAAACCAGATAAGATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTATAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATCAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCAGCCTCACACTACCAACACATTACAATCTCAGAGGCTCTTCGAGCTGCACAAATTGATGTTCCCATTGAGGTCAACCACCTAGCATCAAAAGGCAATGGACGAGTCCTCAATTTCAGTGTAAGCGCACCTGTATGTGAATCTATGGTCAATGTATCACATCCTGCAGAAAGAAAGGTCTTGAATGGAACAAGGAATGAATTTGAGGGAGCCAAAGGACCTTGTGAGGGTGGGGAAACTGGTGATGATTGTTCTAGTGCATCTTCAGTAACAATGTCAAGCTCAATGGAGAATGGAGCCAGGGGGTTCCCTCAAGAACCACAGATGCAGAACATCAATGGTTTTCCTTCTCAAATCCCATGTCTTCCTGGTGTTCCTTGGCCTTGTTCATGGACTGCACCAATACCTCCACCAGCCTTCTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGTTGCAGTGCTCCAGGTTCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTCCTCCAATCCCTGGTCCAAATTCTCCGACGCTAGGGAAGCATTCGAGAGACGGCGACGAACTCCAGGCTGATAATTCCGAGATGGAAAATCCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGATCCAAACGAAGCTGCTAAGAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCAATCAAAGCTGTTGATCTGTCTAATGTTTTCCAATCAAAGGGCGACCAAAAGAGTAACGTTTCTGAAGTGTTGTCTCCAGTTTTGCAAGCCAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCACGAGCGGTCGTGA 1473 43.99 MPAETPNIQFLFIYLYFFLFTFIFFWSSKMMEIKDSAIRIFGKEIPLPADSEAPLMESDDSDSSSEKENRDGAVEKHAIVGKAAESSAAKEETLHDSEDYACVKTANEVHMNPEVLSADENDKLAASKTEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTIRNVPVGAGRRKNKNSASHYQHITISEALRAAQIDVPIEVNHLASKGNGRVLNFSVSAPVCESMVNVSHPAERKVLNGTRNEFEGAKGPCEGGETGDDCSSASSVTMSSSMENGARGFPQEPQMQNINGFPSQIPCLPGVPWPCSWTAPIPPPAFCPPGVPLSFYPATYWSCSAPGSWNIPWFTPQPCPPIPGPNSPTLGKHSRDGDELQADNSEMENPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSNVFQSKGDQKSNVSEVLSPVLQANPAALSRSLTFHERS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11852184 11855292 - Cp4.1LG04g14900.1 Cpe04g01497 469059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01497 490 PANTHER CYCLIC DOF FACTOR 1 30 489 - -
Cpe04g01497 490 MobiDBLite consensus disorder prediction 51 74 - -
Cpe04g01497 490 ProSiteProfiles Zinc finger Dof-type profile. 150 204 IPR003851 GO:0003677|GO:0006355
Cpe04g01497 490 PANTHER CYCLIC DOF FACTOR 2 30 489 IPR045174 GO:0003700|GO:0006355
Cpe04g01497 490 MobiDBLite consensus disorder prediction 286 304 - -
Cpe04g01497 490 MobiDBLite consensus disorder prediction 378 416 - -
Cpe04g01497 490 ProSitePatterns Zinc finger Dof-type signature. 152 188 IPR003851 GO:0003677|GO:0006355
Cpe04g01497 490 MobiDBLite consensus disorder prediction 275 304 - -
Cpe04g01497 490 Pfam Dof domain, zinc finger 147 204 IPR003851 GO:0003677|GO:0006355
Cpe04g01497 490 MobiDBLite consensus disorder prediction 125 146 - -
Cpe04g01497 490 MobiDBLite consensus disorder prediction 60 74 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01497 Cpe18g00789 CCT
Cpe04g01497 Cpe18g00789 ECH
Cpe04g01497 Cpe20g00016 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00467 Cpe-Chr3:2700951 Cpe04g01497 Cpe-Chr4:11852184 5.74E-65 dispersed
Cpe04g01497 Cpe-Chr4:11852184 Cpe08g00683 Cpe-Chr8:5134313 2.83E-60 dispersed
Cpe01g01472 Cpe-Chr1:8794573 Cpe04g01497 Cpe-Chr4:11852184 7.17E-55 wgd
Cpe18g00789 Cpe-Chr18:7448845 Cpe04g01497 Cpe-Chr4:11852184 0 wgd
Cpe02g01058 Cpe-Chr2:9712224 Cpe04g01497 Cpe-Chr4:11852184 1.08E-123 wgd
Cpe20g00016 Cpe-Chr20:95532 Cpe04g01497 Cpe-Chr4:11852184 2.39E-114 wgd
Cpe04g01497 Cpe-Chr4:11852184 Cpe09g00184 Cpe-Chr9:1063668 6.80E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49441 PF02701 zf-Dof 2.00E-32 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01497 - - cmax:111471198 894.034