Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01500 ATGGCGGAAGAGACAATCCCTCAACTCGGAGAAAACGGTCCGGAGGTAACCAACTCCTCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGGGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGGTGACTGTGTCGGAGAGGCGAAAAAGCTGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGATTACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGTACGAGCTGATGGTGTTGCTGGATTTGATTAAGAAGGGACATGTCGAACCGGACAAAAAGATCGGCTGTGGTGTTCGCGCTTGCCAAATTCGATACCATCCCATGTGGAAAAGCAAGTGCTTCTTCCTGATTCGGGAGGATGGGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCACTGCCTGAAAACTTGAAGACGATATCTGATGCAAACAGGGCATTGGGTGGTGGTAAGCACCGCGGTGGAGGAAGAGGAGGAGGGGGTAGAACCTACAATTCTGCATTGAATAGTAACTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCAATAACACCATTATATCAGAAGATGGTGGAGAAAATGAAAAGAAGGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGTGCGGAGAAAGGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAACTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACGCTAATCAAGAATGTGAAGGAGCTTGAGAAGGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGACCGGATTTACAGTTGGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACAAACAACTCCTCAGCCACCAGGGTTCATCAGGATGATGATGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGTTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA 1374 46.94 MAEETIPQLGENGPEVTNSSAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGAGDCVGEAKKLKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGSADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRGGGGRTYNSALNSNCNFGFQDSIFDVVPLFETCPNDSFLVLKDIEPNNTIISEDGGENEKKGLERKEGRGKRKWCGERSSSPSKGLSRKTISEYFWMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSATRVHQDDDEEEEDEEMKYLLADCSFSFTGGSLLLY 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11863618 11867305 - Cp4.1LG04g14960.1 Cpe04g01500 469062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01500 457 Coils Coil 69 89 - -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 270 304 - -
Cpe04g01500 457 Pfam Protein of unknown function (DUF3223) 119 190 - -
Cpe04g01500 457 Pfam RWP-RK domain 306 353 IPR003035 -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 274 298 - -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 1 101 - -
Cpe04g01500 457 PANTHER PROTEIN EMBRYO DEFECTIVE 514 18 225 - -
Cpe04g01500 457 PANTHER - 18 225 IPR044673 -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 51 98 - -
Cpe04g01500 457 ProSiteProfiles RWP-RK domain profile. 291 373 IPR003035 -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 414 433 - -
Cpe04g01500 457 Gene3D - 95 193 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01500 Cpe18g00795 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01500 Cpe-Chr4:11863618 Cpe06g00160 Cpe-Chr6:870837 2.56E-09 dispersed
Cpe02g00282 Cpe-Chr2:1458353 Cpe04g01500 Cpe-Chr4:11863618 2.09E-08 transposed
Cpe09g00019 Cpe-Chr9:114286 Cpe04g01500 Cpe-Chr4:11863618 1.92E-32 transposed
Cpe18g00795 Cpe-Chr18:7465716 Cpe04g01500 Cpe-Chr4:11863618 3.48E-103 transposed
Cpe18g00794 Cpe-Chr18:7463360 Cpe04g01500 Cpe-Chr4:11863618 1.93E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49442 PF11523 DUF3223 2.80E-23 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01500 - - cmax:111471365 395.586