Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01500 ATGGCGGAAGAGACAATCCCTCAACTCGGAGAAAACGGTCCGGAGGTAACCAACTCCTCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGGGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGGTGACTGTGTCGGAGAGGCGAAAAAGCTGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGATTACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGTACGAGCTGATGGTGTTGCTGGATTTGATTAAGAAGGGACATGTCGAACCGGACAAAAAGATCGGCTGTGGTGTTCGCGCTTGCCAAATTCGATACCATCCCATGTGGAAAAGCAAGTGCTTCTTCCTGATTCGGGAGGATGGGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCACTGCCTGAAAACTTGAAGACGATATCTGATGCAAACAGGGCATTGGGTGGTGGTAAGCACCGCGGTGGAGGAAGAGGAGGAGGGGGTAGAACCTACAATTCTGCATTGAATAGTAACTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCAATAACACCATTATATCAGAAGATGGTGGAGAAAATGAAAAGAAGGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGTGCGGAGAAAGGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAACTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACGCTAATCAAGAATGTGAAGGAGCTTGAGAAGGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGACCGGATTTACAGTTGGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACAAACAACTCCTCAGCCACCAGGGTTCATCAGGATGATGATGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGTTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA 1374 46.94 MAEETIPQLGENGPEVTNSSAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGAGDCVGEAKKLKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGSADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRGGGGRTYNSALNSNCNFGFQDSIFDVVPLFETCPNDSFLVLKDIEPNNTIISEDGGENEKKGLERKEGRGKRKWCGERSSSPSKGLSRKTISEYFWMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSATRVHQDDDEEEEDEEMKYLLADCSFSFTGGSLLLY 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11863618 11867305 - Cp4.1LG04g14960.1 Cpe04g01500 469062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01500 457 Coils Coil 69 89 - -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 270 304 - -
Cpe04g01500 457 Pfam Protein of unknown function (DUF3223) 119 190 - -
Cpe04g01500 457 Pfam RWP-RK domain 306 353 IPR003035 -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 274 298 - -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 1 101 - -
Cpe04g01500 457 PANTHER PROTEIN EMBRYO DEFECTIVE 514 18 225 - -
Cpe04g01500 457 PANTHER - 18 225 IPR044673 -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 51 98 - -
Cpe04g01500 457 ProSiteProfiles RWP-RK domain profile. 291 373 IPR003035 -
Cpe04g01500 457 MobiDBLite consensus disorder prediction 414 433 - -
Cpe04g01500 457 Gene3D - 95 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01500 - - - cmax:111471365 395.586
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01500 Cpe18g00795 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01500 Cpe-Chr4:11863618 Cpe06g00160 Cpe-Chr6:870837 2.56E-09 dispersed
Cpe02g00282 Cpe-Chr2:1458353 Cpe04g01500 Cpe-Chr4:11863618 2.09E-08 transposed
Cpe09g00019 Cpe-Chr9:114286 Cpe04g01500 Cpe-Chr4:11863618 1.92E-32 transposed
Cpe18g00795 Cpe-Chr18:7465716 Cpe04g01500 Cpe-Chr4:11863618 3.48E-103 transposed
Cpe18g00794 Cpe-Chr18:7463360 Cpe04g01500 Cpe-Chr4:11863618 1.93E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g556 . . . . . . Bma06g00170 . . . Cma10g00190 Cma11g00144 Car10g00180 Car11g00150 Sed08g0214 . Cpe04g01500 Bhi02g00326 Tan09g2124 Cmetu02g0201 . Hepe09g0121 . . Cla06g01592 Cam06g1765 Cec06g1818 Cco06g1824 Clacu06g1728 Cmu06g1672 Cre06g2488 Cone2ag0844 Cone16ag0171 . . . . . . . . . Bda14g00853 . . . . . Cmo10g00207 Cmo11g00165 . . . . . Cpe18g00795 . . . . . . . . . . . . . . Lsi06g01465 Csa01g00233 Chy02g02499 Cme02g01885
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g01500 CCT 291 416 AtRKD Transcription Factor Family AT1G18790 69.2 1.4e-39 160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006381 1 1 1 1 0 1 3 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49442 PF11523 DUF3223 2.80E-23 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01500 Cpe_Chr04 FPKM 39.758026 45.758556 29.721359 29.330837 11.792912 9.174006 11.876761 17.782806 20.314693 21.037403