Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01511 ATGGCGGATCATTCTGTTGGTCCCGCCAGTTTCTGGACTCAAGCTAATGCTCTGCTCAGGAAGAACTTGACTTATCAGAAACGCAATATGATGACGAACGTTCGCCTCATTTTGTTCCCATTTCTCCTGTGTTTGTTACTTGTACTCCTTCAATCATTGATCAACAATGAATTGGACAAGCCCAAATACAGATGTGGTTGTACATGTATTGATACTAATGCAGATGGTACCTGTGAAGAAGTCTGTGGAATTCAATATTCAACTTTGGAACAAGCTGCCAGTTGCCCAATTGAAAGCCCACCCGAATGGCCTCCTTTGTTGCAAATGCCAGCTCCCGAGTTTCGCGCTGTTAGAGCCAGTTTTAATCCATTTATGGACTTACGGGACGAGTTGTGCAGGCGAACGGGGACGTGTCCGGCAACTGTACTTTTCACTGGAACTAATCAATCTCTTGGAGAAATTCTGGTTGGAAGCATGTTCACAAATTCATTCAATCTCAATTCCAACAATGTTTCAGATAGTTTAGCTTTTAATGTGGTGGGCTCAAGCACGATGATTAAGGACAACAACTTTCTGGAGCCAGCTTTTGCTTCAAACCTTCCTTTGTATAATGTGCAACTTCAGTGCACAGGAAACTCTTCTCTTACTGTTTCTGTTCCTGTTATGTCTGTTGAAAAGCCTAAAGAGGTTATATGTGTTCAAGGCTTACATTTGTGGCGCAACAGTGCTTCTGAGGTCAACGATGAGATGTATAAGGGATTTCATAAGGGAAATTCAGAGGGGAAAGTTAATGAAATCCTTGCAGGTTTTGATTTCTTAAACTCAAATGCAAATAGCTTTAATGTTAGCGTTTGGTATAATTCAAGTATCAGAAACGAATCTGGATATTTTCCTCCGACATTACTGCGTGTTCCACGCTCAGTGAATCTAGCAACCAATGCCTACCTTAAAAATTTGGTCGGACCAGGAACAGAAATTCCTTTCGAGTTTGTCAAAGAAATGCCAAAGGCAGGATCCAAGCTCAGGCTCGATCTATCCTCTTTGCTTGGCACTCTTTTCTTTACTTGGGTCGTTCTGCAGCTTTTCCCTGTTGTATTGACATCATTGGTTTACGAGAAGCAACAGAAGCTGAGAATCATGATGAAAATGCATGGCCTTGGCGACGGGCCTTATTGGTTGATCTCTTATGCATATTTCTTTACAATATCTGCCATTTACATGCTATGTTTTGTGGTATTTGGCTCAGTTATAGGGCTAAAATTTTTCACATTGAACGACTACAGCATCCAAGTTGTGTTTTATTTCCTCTATATAAACGTGCAAATTTCTTTGGCTTTCTTAACTGCAGCATGGTTCACAAATGTAAAGACTGCTTCAGTCATAGCTTACATACTCGTATTTGGATCGGGGCTCTTAGGCGGCTTCCTTTTTCATTTTTTTCTTGAAGACCCTTCATTTCCATATGCCTGGATTATAGTATTGGAGTTATACCCTGGCTTTTCTCTGTATCGTGGATTATACGAGTTTGCACAGTATTCCTTCATTGGAAACTTTATGGGGACTGATGGAATGCGTTGGGGGAAGTTGAGTGACGAACTTAACGGGATGCAAGATGTGATGATTATCATGGTTGTAGAGTGGTTGTTGAGGGAGAAGGTTGAACAGTTATTACTGGAACCAGATACGAGTCATGCCATTGTGTGTGACAACCTCAAAAAGGTCTATCCAGGAAGAGATGGAAATCCTGAGAAGTTTGCTGTAAAAGGTTTATCTCTTGCTGTTCCTCGAGGGGAGTGTTTCGGCATGCTCGGTCCAAATGGTGCAGGGAAAACCTCATTTATCAGTATGATGATTGGCCTCACAAAGCCGAGTGCTGGCACGGCGTTTGTCCAAGGTCTGGATATATGGAACGATATGGATATGATATATACTAACATGGGTGCAGTGGAAGAGTCTTTAAAGGGTGTCAATCTGTATCACGGAGGAGTTGCTGATAAACAAGCTGGGAAGTACAGTGGGGGAATGAAGAGGAGGCTCAGTGTTGCTATTTCACTAATGGGAGACCCCAAAGTCGTTTACATGGACGAACCGAGCACTGGGCTTGATCCAGCTTCAAGAAACAGTTTATGGAATGTGGTGAAGCGCGCAAAGCGAGATCGAGCTATAATTCTTACCACACATTCCATGGAGGAAGCAGAAGTCCTCTGCGACCGATTGGGAATCTTCGTAGATGGAAGCTTGCAGTGCATAGGAAATCCTAAAGAGCTCAAAGGTAGATATGGAGGATCTTATATATTCACAATGACTGTATCTGCAAATCAAGACGTTGATGTCGAGAATATGGTGAAGCATCTGTCTCCCAGTGCTAGTAAGATCTACCACATCTCTGGAACTCAGAAATATGAACTGCCCAAACACGAGGTCCGAATTGCTGACGTGTTTCAAGCTGTGGAAAATGCAAAGAGTAGGTTCACAGTCTTTGCTTGGAGTCTGGCTGACACAACATTAGAGGATGTCTTTATTAAGGTTGCACGAGGAGCACAATCGTTCGATGTTCTTTCATGA 2565 42.53 MADHSVGPASFWTQANALLRKNLTYQKRNMMTNVRLILFPFLLCLLLVLLQSLINNELDKPKYRCGCTCIDTNADGTCEEVCGIQYSTLEQAASCPIESPPEWPPLLQMPAPEFRAVRASFNPFMDLRDELCRRTGTCPATVLFTGTNQSLGEILVGSMFTNSFNLNSNNVSDSLAFNVVGSSTMIKDNNFLEPAFASNLPLYNVQLQCTGNSSLTVSVPVMSVEKPKEVICVQGLHLWRNSASEVNDEMYKGFHKGNSEGKVNEILAGFDFLNSNANSFNVSVWYNSSIRNESGYFPPTLLRVPRSVNLATNAYLKNLVGPGTEIPFEFVKEMPKAGSKLRLDLSSLLGTLFFTWVVLQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFTISAIYMLCFVVFGSVIGLKFFTLNDYSIQVVFYFLYINVQISLAFLTAAWFTNVKTASVIAYILVFGSGLLGGFLFHFFLEDPSFPYAWIIVLELYPGFSLYRGLYEFAQYSFIGNFMGTDGMRWGKLSDELNGMQDVMIIMVVEWLLREKVEQLLLEPDTSHAIVCDNLKKVYPGRDGNPEKFAVKGLSLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPSAGTAFVQGLDIWNDMDMIYTNMGAVEESLKGVNLYHGGVADKQAGKYSGGMKRRLSVAISLMGDPKVVYMDEPSTGLDPASRNSLWNVVKRAKRDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGSYIFTMTVSANQDVDVENMVKHLSPSASKIYHISGTQKYELPKHEVRIADVFQAVENAKSRFTVFAWSLADTTLEDVFIKVARGAQSFDVLS 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11913871 11922000 - Cp4.1LG04g15170.1 Cpe04g01511 469073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01511 854 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 550 648 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cpe04g01511 854 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 647 851 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cpe04g01511 854 Gene3D - 558 647 IPR027417 -
Cpe04g01511 854 Gene3D - 648 791 IPR027417 -
Cpe04g01511 854 Pfam AAA domain, putative AbiEii toxin, Type IV TA system 668 729 IPR003959 GO:0005524|GO:0016887
Cpe04g01511 854 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 566 769 IPR003439 GO:0005524
Cpe04g01511 854 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 549 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cpe04g01511 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 767 IPR027417 -
Cpe04g01511 854 PANTHER OS08G0398300 PROTEIN 8 549 - -
Cpe04g01511 854 CDD ABC_subfamily_A 570 757 - -
Cpe04g01511 854 SMART AAA_5 596 745 IPR003593 -
Cpe04g01511 854 ProSitePatterns ABC transporters family signature. 671 685 IPR017871 GO:0005524
Cpe04g01511 854 Pfam ABC transporter 588 640 IPR003439 GO:0005524
Cpe04g01511 854 PANTHER OS08G0398300 PROTEIN 550 648 - -
Cpe04g01511 854 PANTHER OS08G0398300 PROTEIN 647 851 - -
Cpe04g01511 854 Pfam ABC-2 family transporter protein 247 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01511 - - - twl:120016728 1250.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01509 Cpe-Chr4:11901507 Cpe04g01511 Cpe-Chr4:11913871 1.20E-81 dispersed
Cpe04g01511 Cpe-Chr4:11913871 Cpe20g00197 Cpe-Chr20:1131548 0 dispersed
Cpe04g01510 Cpe-Chr4:11909795 Cpe04g01511 Cpe-Chr4:11913871 3.17E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01511 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0