Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g01518 | ATGCTCAACCAGAGTGTTCGACCGGTGATACCAGACGGAATCGAAGACAGCTCTGTCTTTCTCACTAACGCTACTGCAGATCAATCTCTGGCATTGGCATTGGGATTGGCATTTGAGTCGCTCATAGGAGCGCTGGAGTATATTAGAGATTCTGCAGTAAAAACGTCTAAACTTCAAAGGAAAATGGATGAAAAGGGCGAGAAGCCTGAGGTTTTGGAAGCTGTATTGAAGGAAACTGTGGACTTGGAAAATATACCCATTGAGGAGGTTTTTGATAATTTGAGATGCGGCAAAGAGGGTCTTACCACAGCGGCTGCTGAGGCACGGCTTGTTATTTTTGGTCTCAACAAGCTTGAGGAGAAGAAGGAAAGTAAATTCTTGAAGTTTTTGGGGTTTATGTGGAATCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTTGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCGCACTGTTGCTTATCAACTCAACAATTAGTTTTATTGAGGAAAACAATGCCGGAAACGCTGCAGCTGCACTAATGGCTAGTTTAGCTCCCCAAGCCAAGATTCTTCGGGATGGAAGGTGGAGTGAGCAAGATGCTGCGGTTTTAGTTCCTGGTGATATTATAAGCATCAAACTTGGGGACATAATTCCAGCTGATGCTCGTCTTCTTGAGGGAGATCCATTGAAAATTGATCAGTCTGCTCTTACAGGTGAATCTCTTCCTGTTACAAAAGGTCCTGGCGATGGCATATACTCTGGTTCTACTTGCAAACAAGGCGAGATTGAAGCGGTTGTCATTGCCACTGGTGTTCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACCACCAATCAAGTGGGTCACTTCCAAAAGGTCTTAACTGCAATAGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTACAGAAATTATTGTCATGTACCCAATTCAAGATCGGGAATATCGTCCTGGAATTGACAATCTTCTTGTGCTTCTGATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTGACAATGGCTATTGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCCATTGAAGAGATGGCAGGTATGGATGTGCTTTGCAGTGACAAGACTGGAACACTGACATTAAACAAGCTAACTGTTGACAAAAATCTTGTTGAGATATATGCAGTTTCAATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTTGTATGGAAATTTGACTTCCCACCTTTTATGGTGCTCATCATTGCCATTCTCAATGATGGTACAATAATGACGATATCGAAGGATAGAGTGAGACCATCTCCGTTGCCTGATAGCTGGAAGCTGGGTGAAATTTTTACCACTGGCATTATTCTTGGTGGCTACTTGGCAATGATGACTGTGATCTTCTTTTGGGTAGCCTATAAAACAGACTTCTTTCCACGAGTGTTTGGGGTAGCAACTCTCGAGAAAACTGCTCACGATGACATTAGGAAACTTGCCTCAGCAGTGTATCTGCAAGTAAGCACTATAAGTCAGGCTCTCATATTTGTTACACGTTCGCGAGGTTGGTCATATGTGGAACGCCCTGGGTTATTATTGGTTGCAGCTTTTCTGGTTGCGCAGCTGATTGCTACATTACTTGCGGTTTATGCAAACTGGAGCTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATTATCTTTTACATCCCACTTGATATCATAAAATTCATCATACGATATGCTTTGAGCGGGAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCCTTTACGAGACAAAAGGATTTCGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCACAAAGAACATTGCATGGATTGCAAACACCCGATGCGAAGTTCCACGACCGAACTCACTTCACCGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTCCACACCCTGAAAGGCCATGTTGAATCAGTGGTGAGGATGAAAGGACTGGACATAGACACAATTCAGCAAGCTTACACAGTGTGA | 2163 | 44.2 | MLNQSVRPVIPDGIEDSSVFLTNATADQSLALALGLAFESLIGALEYIRDSAVKTSKLQRKMDEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCGKEGLTTAAAEARLVIFGLNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLLINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMITEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEIYAVSITIRIVLGFMLLALVWKFDFPPFMVLIIAILNDGTIMTISKDRVRPSPLPDSWKLGEIFTTGIILGGYLAMMTVIFFWVAYKTDFFPRVFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRGWSYVERPGLLLVAAFLVAQLIATLLAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDIIKFIIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQTPDAKFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRMKGLDIDTIQQAYTV | 720 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 11954464 | 11961069 | - | Cp4.1LG04g15140.1 | Cpe04g01518 | 469080 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g01518 | 720 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 81 | 618 | IPR023298 | - | |
| Cpe04g01518 | 720 | Gene3D | - | 132 | 208 | - | - | |
| Cpe04g01518 | 720 | Gene3D | - | 262 | 617 | - | - | |
| Cpe04g01518 | 720 | PRINTS | P-type cation-transporting ATPase superfamily signature | 245 | 259 | - | - | |
| Cpe04g01518 | 720 | PRINTS | P-type cation-transporting ATPase superfamily signature | 395 | 409 | - | - | |
| Cpe04g01518 | 720 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 67 | 418 | - | - | |
| Cpe04g01518 | 720 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 416 | 700 | - | - | |
| Cpe04g01518 | 720 | SUPERFAMILY | Calcium ATPase, transduction domain A | 198 | 295 | IPR008250 | - | |
| Cpe04g01518 | 720 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 397 | 403 | IPR018303 | - | |
| Cpe04g01518 | 720 | Pfam | Cation transporter/ATPase, N-terminus | 84 | 147 | IPR004014 | - | |
| Cpe04g01518 | 720 | SMART | Cation_ATPase_N_a_2 | 81 | 153 | IPR004014 | - | |
| Cpe04g01518 | 720 | Coils | Coil | 671 | 691 | - | - | |
| Cpe04g01518 | 720 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 67 | 418 | - | - | |
| Cpe04g01518 | 720 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 416 | 700 | - | - | |
| Cpe04g01518 | 720 | Gene3D | - | 669 | 720 | - | - | |
| Cpe04g01518 | 720 | Pfam | E1-E2 ATPase | 196 | 374 | - | - | |
| Cpe04g01518 | 720 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 167 | 414 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g01518 | Cpe18g00807 | CCT | |
| Cpe04g01518 | Cpe18g00807 | ECH | |
| Cpe04g01518 | Cpe20g00206 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00405 | Cpe-Chr2:2256217 | Cpe04g01518 | Cpe-Chr4:11954464 | 0 | dispersed | |
| Cpe04g01518 | Cpe-Chr4:11954464 | Cpe18g00548 | Cpe-Chr18:6048594 | 2.65E-180 | dispersed | |
| Cpe01g02378 | Cpe-Chr1:19893753 | Cpe04g01518 | Cpe-Chr4:11954464 | 6.37E-95 | wgd | |
| Cpe18g00807 | Cpe-Chr18:7531941 | Cpe04g01518 | Cpe-Chr4:11954464 | 0 | wgd | |
| Cpe20g00206 | Cpe-Chr20:1186069 | Cpe04g01518 | Cpe-Chr4:11954464 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g01518 | K01535 | - | oeu:111387731 | 1059.28 |