Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01519 ATGGGGCCTAAGAAGAAAATCATTGATCCGCGTTCTAAACAATCTCCTGCTGCTCGTGGAGTTGTTGTCGATGTTCCAAGCTCAGCGAACGCAGCCGACCAGAATTCAATACCTGAAAAGGCTAGTAACCACAACCAAAGTAGGATCGAGCCGGTGCTTCTCAATGGACCGGATGGGTTGTCTTATTCCACAGTTAAACTCGAATGCGAGCGGGCTCTTACCGCGCTTCGGCGCGGGAACCACACTAAGGCACTGAGGCTTATGAAGGAGTTGAGCTCCAGAAATGAGAACTCTGTTCACTCTGCATTGATTCATCGAGTTCAGGGTACTATTTGTGTAAAGGTAGCGTCGATTATTGATGACCTGAATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTCCAGCTCTCACCTAACTCTATCGAGTTTTCCCATTTCTATGCAAATTTGCTGTACGAGGTTGCAAACGATGCGAAGGAGTATGAGGAGGTGGTGCAGGAGTGTGAGCGGGCCCTTGGCATTGAAAATCCAATCGATCCCGCCAAGGAGAGCTTGCAGGATGAAAAGAGTCAGAAGATACCTACTGCAGAAGCGCGGATTACACATGTTCAAACTGAATTGAGGCAGTTAATTCAAAAGTCAAATATATATTCGATATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTTGATTCCGATAAGAAGAGTGACAGAGGACCCAATGGAGGTGAGGTTGGTTCAGGCTAGAAGGACAAATGAAATTAAGAAGGCAACCAAAACACCTGAGGAGAGAAGAAAGGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTTTTGCAACAGAAGTGTGAGACACCTCAAATTCAAAACGAAGAAGGTAAAGTTGATCGGTCCCTAGATTCATCTTTAGGATCTGGTACAAGAGCTGGCGAGCGACGGAAACATGGCAATTTACGGAAACAGGGATCTTCAGCTGAAAGGAGGGATTTGGTTCATTCTTTTTGGAATTCCATGAGTATAGAAGCAAAGAAAGATTTGCTTAAGATCAAGATAAGTAATCTTAAGGCGCATTTTAGTTCTTCAAAGGATGCTTCGGCGAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATGATGCCAATAAAACATGGAAATTTTGGGTTTGCTGCAGATGTGATGAGAAATTTGTGGATTCGGATTCCCATATGCACCATGTGGTTCAAGAGCACATGGGTAACCTTTTACCAAAAATGCAATCAATTTTGCCCCAGAATGTTGATGATGAATGGACCAAAATGATTCTTAATTGCTCCTGGAAAGCATTGGATGTATCAGCTGCAGCTAAAATGCTCACCGCTGAAACAAAATGCAAAGATTCTGAGTTGGTTGTAGATATCTTCCCACAGCATCATTCAGAATGTGATAACTATTTCAAAGATGCATGGGATTCTTCTCCAGAGAAGCATAAATATGGGGATAGTTTAAATGAATGCCGGCTTTCTGAAAAAATTACCAACAACGGATCTAAGACCTATCATGAAAACCAGGGTTCTGTGGCATCATATTCCTCATCTGACAGCTTTCCTGTATCTGATGATCTTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCAGTATTTGAGTTGCTTATAAGACATAAATATCTTGCTGCTAGCCATTTAAACAAGGTTATACAATTTGCAATGGATGAGCTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAGGGTCTGGACCAAACACCACTATGTATTTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAACTACTGGTCAAATTGAAGATTCAAAGAGTGATAAACAAGCGGTTGAAGTCAGAGAGAAAGTTGTTCTCAGTGAAGATGCGTGTTTGCTCCTGAATGAGTGTTTGCTGTCATCTGATATCACTCATGCTGATGTTCCGGTTGCAGCTGCAGATCATATGCTTGCTGCAACTGCCAAGGATGTTACTTCAAATGGGGTTCTTTCTGGTGTTGACCCCTTTCTTTCCTGGATATATGCAGAGGGCAAGAAGACGGAAGCTTTGAATGAATTTATCCCCAAGAGTTATGAGTCAGTCCTGAGGAAGCGAAGGGAGGAGCTTATTGAGGCTGAAAATGGTGTGCTGTTTATCAGCAGTAGGTTTGAGTTAGATGCTGTAACTAATGTTCTGAAAGAAGCAGAAACTCTGAATGTTAATCAATTTGGATACCAGGAAACTTTTGCCAGCGTGTCTCCACAGTTAGGAGATCTGGAATCTGGTGAAGATGAAGAACGGAGAGCTAAGGATTATTTGCATGAAGTTGATACTTGTATAGAAGTTGCAATACAGAGACAGAAGGAACAGTTATCTATTGAGATTAGCAAAATTGATGCCCGCATCATGCGAAATGTTACTGGAATGCAACAGTTGGAACTTAAGCTCGAACCTGTTTCTGCACATGATTATCAATCGATATTGTTGCCTCTTGTAAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGCCACAAAGAAGTCTGATGCTGCAAGCGAAGCATTTTTAGCTGAATTGGCACTGGATTCGAAGAAGGGTATCAGAGGAGGAACTGATAATTCAAGACATGCACATGAAAAACCAAAGGAAAAGAAAAAGAGCAAGGAGTTTAGGAAAGTCAAGGAGTCTAAGGTGGTCAGTGGTCCTGAGCAGGATGTGCATCGTGGTCAGGCTGTCGATGGAGATCCCTTTCCAGTTTCATCTGATGGTGATGCTGCAGAGGTGGATATTGCTGTTTTTGAGAATGTTGATGCTTTAAGACTACAGGAGGAAGAGCTCAGACGCAAAATTGAGCTGGAAGCTGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATTTGGCTGAACTGCAAAAGAAATCTGCCCAGACAACGCATAGTAATCTCGCTGGACTTGTCCCCAATGTTGAAGGTGCTGATAAACATTTCAAGCCTTCTGTGGTGGATAAATTGGCAGAAAATGATTTGGTTTCCGACTTGTCTAGGAATGGTCCTGCCGTGCGAAATGCTTTGTCAGGTGTCTCCAATGTAGGAGTTCTAGAGAATAGTCTGCCGTCATCTGATAGGAAGAAGGGGAGGAAAGGTAGACGACACAAGGTTTCAATCAAACCAGTAGATGGAAATCAGCCTTCACCATCTGATAAGGATAACGTAGCCTTTGACAACCAATTGACTGAACAAGTTAGATATCATGGCAATCCTCTGCAAGATAGTGTTAATCCACTTCTTGAAGATAATAGTACAAAGACTTCGAGACAACATGTGGAGGATGAAGAGGAAAGATTTCAAGCTGATCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGAAATTACCCTTGATTATGAGTTCCAGGACACCATTGATCAGTCATGGTGAAGTAGATAGTAATGGTCTTCCATCAAATGAACGCAATGTAGAAAATGTGCAGGCAGCTGGTATGTTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTTTGAATGTGATTATTCAGTCATTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATTTTTGCTGCCTTGAACAAGGCATCTGCAGATTCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAGTAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTCTTCCAAGAGGGTCAGATGAATGATGCCTCTGAAGTTTTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTGCTAGTTCGAGTGTTTCTGATACAGACACAGTAGAAAGCAATTGCATAGGGTCTTGGGACTGTTCAAGTGACACTTGTTTGGTACATTCCATCTTTGGAATGGACATTTTTGAACGAATGAATTGCTACAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCTAGTGCTCTTCGGACAACGAAGGTTATGTGTTCAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGTATGTGATCAGGATGTTGGTGGATGTGGAAAACTCAATTACATTCATCACTTCCTCTCCGCACCACCACATGTATTCACAACAGTCTTGGGCTGGCAGAAAACTTGTGAGAGTGCTGATGACATCACAGAGACATTAGCTGCTCTAAGTACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGAATGTCCATAATTTGGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCGTACAGTTGTGACAAGAAATGCTGGATAATGTATGATGATAGAACCGTTAAGGTAATTGGTGGCTGGGCTGATGTTCTTACCATGTGTGAAAAAGGACACTTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4659 41.83 MGPKKKIIDPRSKQSPAARGVVVDVPSSANAADQNSIPEKASNHNQSRIEPVLLNGPDGLSYSTVKLECERALTALRRGNHTKALRLMKELSSRNENSVHSALIHRVQGTICVKVASIIDDLNTKQRHLKNAIESARKAVQLSPNSIEFSHFYANLLYEVANDAKEYEEVVQECERALGIENPIDPAKESLQDEKSQKIPTAEARITHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRTNEIKKATKTPEERRKEIEVRVAAARLLQQKCETPQIQNEEGKVDRSLDSSLGSGTRAGERRKHGNLRKQGSSAERRDLVHSFWNSMSIEAKKDLLKIKISNLKAHFSSSKDASANEVISEALSFYDANKTWKFWVCCRCDEKFVDSDSHMHHVVQEHMGNLLPKMQSILPQNVDDEWTKMILNCSWKALDVSAAAKMLTAETKCKDSELVVDIFPQHHSECDNYFKDAWDSSPEKHKYGDSLNECRLSEKITNNGSKTYHENQGSVASYSSSDSFPVSDDLERTKLLEKIHAVFELLIRHKYLAASHLNKVIQFAMDELQGLASGSHLLNQGLDQTPLCICFLGASQLRKILKFLQELSQSCGIGRYSDKTTGQIEDSKSDKQAVEVREKVVLSEDACLLLNECLLSSDITHADVPVAAADHMLAATAKDVTSNGVLSGVDPFLSWIYAEGKKTEALNEFIPKSYESVLRKRREELIEAENGVLFISSRFELDAVTNVLKEAETLNVNQFGYQETFASVSPQLGDLESGEDEERRAKDYLHEVDTCIEVAIQRQKEQLSIEISKIDARIMRNVTGMQQLELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDATKKSDAASEAFLAELALDSKKGIRGGTDNSRHAHEKPKEKKKSKEFRKVKESKVVSGPEQDVHRGQAVDGDPFPVSSDGDAAEVDIAVFENVDALRLQEEELRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTTHSNLAGLVPNVEGADKHFKPSVVDKLAENDLVSDLSRNGPAVRNALSGVSNVGVLENSLPSSDRKKGRKGRRHKVSIKPVDGNQPSPSDKDNVAFDNQLTEQVRYHGNPLQDSVNPLLEDNSTKTSRQHVEDEEERFQADLKKAVRQSLDAFQEQQKLPLIMSSRTPLISHGEVDSNGLPSNERNVENVQAAGMFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFAALNKASADSRREAVAPTSLRVALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTASSSVSDTDTVESNCIGSWDCSSDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTTKVMCSESSFDELLNVVEMNHQLVCDQDVGGCGKLNYIHHFLSAPPHVFTTVLGWQKTCESADDITETLAALSTEIDISVLYRGLDPKNVHNLVSVVCYYGQHYHCFAYSCDKKCWIMYDDRTVKVIGGWADVLTMCEKGHLQPQVLFFEAVN 1552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11964174 11972797 + Cp4.1LG04g15270.1 Cpe04g01519 469081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 297 335 - -
Cpe04g01519 1552 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 711 - -
Cpe04g01519 1552 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 712 1552 - -
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 1129 1152 - -
Cpe04g01519 1552 SUPERFAMILY Cysteine proteinases 1219 1549 IPR038765 -
Cpe04g01519 1552 ProSitePatterns Zinc finger C2H2 type domain signature. 398 419 IPR013087 -
Cpe04g01519 1552 Pfam Protein of unknown function (DUF629) 341 709 IPR006865 -
Cpe04g01519 1552 Pfam Protein of unknown function (DUF629) 711 811 IPR006865 -
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 901 935 - -
Cpe04g01519 1552 CDD Peptidase_C19 1311 1549 - -
Cpe04g01519 1552 Pfam Protein of unknown function (DUF627) 71 181 IPR006866 -
Cpe04g01519 1552 Gene3D Tetratricopeptide repeat domain 61 202 IPR011990 GO:0005515
Cpe04g01519 1552 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 711 - -
Cpe04g01519 1552 PANTHER UBIQUITIN SPECIFIC PROTEINASE 712 1552 - -
Cpe04g01519 1552 Coils Coil 969 1005 - -
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 1129 1145 - -
Cpe04g01519 1552 Pfam Ubiquitin carboxyl-terminal hydrolase 1220 1528 IPR001394 GO:0004843|GO:0016579
Cpe04g01519 1552 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1219 1551 IPR028889 -
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 317 335 - -
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 899 952 - -
Cpe04g01519 1552 Coils Coil 119 139 - -
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 1 51 - -
Cpe04g01519 1552 Coils Coil 1149 1169 - -
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 28 50 - -
Cpe04g01519 1552 MobiDBLite consensus disorder prediction 1076 1115 - -
Cpe04g01519 1552 Gene3D Cysteine proteinases 1203 1550 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01519 Cpe18g00809 CCT
Cpe04g01519 Cpe18g00809 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01519 Cpe-Chr4:11964174 Cpe07g00714 Cpe-Chr7:6014731 9.36E-06 dispersed
Cpe18g00809 Cpe-Chr18:7543724 Cpe04g01519 Cpe-Chr4:11964174 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01519 - - csv:101212702 2194.85