Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01526 | ATGGATCCTCCACTCGTCAATGAATCTTCCTTCTCCGCTGCCAATCCTTCTGCTTACAGCTTGGCCGCGATTTGGCCTTTCGGAGGGGAGCAGGGTGGGAGCACATTGGGACTTCGAATGGCTAATTTGGGTCAGATTCTTGGTGGCTTCCCAGAGAGCTCCACGAATCGCGATGGATCAATGGAGGAATCCACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCCAGAATGGTTTCCACTAGTAGTGCGAATCAATTGAATAAGTCAAAGGGTAAACGGATGAAAGTAGTGGAATCCAGGGATGAAAATGGTGATATAAAAGCTGAAGTGGAATCTAACTCAGGAGATGGTAAGAAGGCGGCTGAGCAAAGCCCGAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATGTTGCAGGACTTAGTTCCAGGTTGTAACAAGGTCATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCATTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAACTGTGAATTCCAGGATGAACATAAGCCCTGGCATAGAGGTTTTTACCGCAAAAAATATTGTTAATCAACCATATGATGCAGCAGCTGGAATATTATATGGTTCACAAACAGCAAGAGAATATAGCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATCGGTGGAAGTTTTGAAAGAACATCTTAG | 837 | 45.16 | MDPPLVNESSFSAANPSAYSLAAIWPFGGEQGGSTLGLRMANLGQILGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLNKSKGKRMKVVESRDENGDIKAEVESNSGDGKKAAEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKMLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSRMNISPGIEVFTAKNIVNQPYDAAAGILYGSQTAREYSQGAQPEWLHMQIGGSFERTS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12000006 | 12005291 | + | Cp4.1LG04g15210.1 | Cpe04g01526 | 469088 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01526 | 278 | CDD | bHLH_AtBPE_like | 144 | 226 | - | - | |
Cpe04g01526 | 278 | MobiDBLite | consensus disorder prediction | 102 | 144 | - | - | |
Cpe04g01526 | 278 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
Cpe04g01526 | 278 | MobiDBLite | consensus disorder prediction | 85 | 100 | - | - | |
Cpe04g01526 | 278 | SMART | finulus | 160 | 210 | IPR011598 | GO:0046983 | |
Cpe04g01526 | 278 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 152 | 224 | IPR036638 | GO:0046983 | |
Cpe04g01526 | 278 | PANTHER | MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 277 | - | - | |
Cpe04g01526 | 278 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 277 | IPR024097 | GO:0006355 | |
Cpe04g01526 | 278 | Pfam | Helix-loop-helix DNA-binding domain | 158 | 205 | IPR011598 | GO:0046983 | |
Cpe04g01526 | 278 | Coils | Coil | 201 | 221 | - | - | |
Cpe04g01526 | 278 | Gene3D | - | 151 | 225 | IPR036638 | GO:0046983 | |
Cpe04g01526 | 278 | MobiDBLite | consensus disorder prediction | 46 | 144 | - | - | |
Cpe04g01526 | 278 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 154 | 204 | IPR011598 | GO:0046983 | |
Cpe04g01526 | 278 | MobiDBLite | consensus disorder prediction | 48 | 68 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01526 | Cpe18g00815 | CCT | |
Cpe04g01526 | Cpe18g00815 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01526 | Cpe-Chr4:12000006 | Cpe07g00608 | Cpe-Chr7:4169450 | 1.12E-92 | dispersed | |
Cpe20g00122 | Cpe-Chr20:682246 | Cpe04g01526 | Cpe-Chr4:12000006 | 6.57E-41 | dispersed | |
Cpe18g00815 | Cpe-Chr18:7580336 | Cpe04g01526 | Cpe-Chr4:12000006 | 2.80E-179 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49447 | PF00010 | HLH | 3.60E-08 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01526 | - | - | csv:101215588 | 482.641 |