Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01526 ATGGATCCTCCACTCGTCAATGAATCTTCCTTCTCCGCTGCCAATCCTTCTGCTTACAGCTTGGCCGCGATTTGGCCTTTCGGAGGGGAGCAGGGTGGGAGCACATTGGGACTTCGAATGGCTAATTTGGGTCAGATTCTTGGTGGCTTCCCAGAGAGCTCCACGAATCGCGATGGATCAATGGAGGAATCCACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCCAGAATGGTTTCCACTAGTAGTGCGAATCAATTGAATAAGTCAAAGGGTAAACGGATGAAAGTAGTGGAATCCAGGGATGAAAATGGTGATATAAAAGCTGAAGTGGAATCTAACTCAGGAGATGGTAAGAAGGCGGCTGAGCAAAGCCCGAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATGTTGCAGGACTTAGTTCCAGGTTGTAACAAGGTCATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCATTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAACTGTGAATTCCAGGATGAACATAAGCCCTGGCATAGAGGTTTTTACCGCAAAAAATATTGTTAATCAACCATATGATGCAGCAGCTGGAATATTATATGGTTCACAAACAGCAAGAGAATATAGCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATCGGTGGAAGTTTTGAAAGAACATCTTAG 837 45.16 MDPPLVNESSFSAANPSAYSLAAIWPFGGEQGGSTLGLRMANLGQILGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLNKSKGKRMKVVESRDENGDIKAEVESNSGDGKKAAEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKMLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSRMNISPGIEVFTAKNIVNQPYDAAAGILYGSQTAREYSQGAQPEWLHMQIGGSFERTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12000006 12005291 + Cp4.1LG04g15210.1 Cpe04g01526 469088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01526 278 CDD bHLH_AtBPE_like 144 226 - -
Cpe04g01526 278 MobiDBLite consensus disorder prediction 102 144 - -
Cpe04g01526 278 MobiDBLite consensus disorder prediction 69 84 - -
Cpe04g01526 278 MobiDBLite consensus disorder prediction 85 100 - -
Cpe04g01526 278 SMART finulus 160 210 IPR011598 GO:0046983
Cpe04g01526 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 224 IPR036638 GO:0046983
Cpe04g01526 278 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 277 - -
Cpe04g01526 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 277 IPR024097 GO:0006355
Cpe04g01526 278 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983
Cpe04g01526 278 Coils Coil 201 221 - -
Cpe04g01526 278 Gene3D - 151 225 IPR036638 GO:0046983
Cpe04g01526 278 MobiDBLite consensus disorder prediction 46 144 - -
Cpe04g01526 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983
Cpe04g01526 278 MobiDBLite consensus disorder prediction 48 68 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01526 Cpe18g00815 CCT
Cpe04g01526 Cpe18g00815 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01526 Cpe-Chr4:12000006 Cpe07g00608 Cpe-Chr7:4169450 1.12E-92 dispersed
Cpe20g00122 Cpe-Chr20:682246 Cpe04g01526 Cpe-Chr4:12000006 6.57E-41 dispersed
Cpe18g00815 Cpe-Chr18:7580336 Cpe04g01526 Cpe-Chr4:12000006 2.80E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49447 PF00010 HLH 3.60E-08 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01526 - - csv:101215588 482.641