Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01527 ATGAGTAAATCTGGGCTCCTACAAGGAAAACCAACAAATTTACTTGTGAATGGATGTCAAAATTCGGCTGCGTTTGGATTGATGAATCATCGAAGTCCAGCCGGAGTGGACGTGGGTCGAAGCCCAAAAGCCAGAAGGTGGGCAATTTCTGAAGCCCCAATGATCCGAAACTATAAAGTATTGCCAAGCGCGGCCAATTTGTTGTTTAATCGCCTCGCGCTTTCACCTTTCCAACAAACACTTCTTCCATTATCGTGTCGCTCATCTGGGTCCCCGAAAATGGCGAGTAACGAGAGCATCAAATCGGGAAATGAAGAACAATTGAAGCCCATATTTGAGAAGAAACGGGTTCTTCGATCCAGCGTTCGAAAAGCACTCAAAGCCATGGACCCTTCCCTCAGATCCCATGAAGGTACTGATTGCTTGCTTATCTTCAACGATTTACTTCGCTCTTCTGAAAATATTAATCGGATTCATAGAACAATTGATTGTGTGTCGTCTTCTGATGTTGATGAATCGCCGCTTTCTACTTGTTACTCAGACAATGCAATTCAGAGTATCGTTTTGGAGGCCCCGTGGTTTAAATCTAGTCAGAGATTATGTGCTTATGTGAGTTGCAGTGCCTTAAGAGAAGTTGATACGTCGAGACTGTTATCAGAGACTTTGCAACACCCACCAAAAGATGGTTATCCGAAGAAGATTTATGTCCCGCGTGTGGAGGACAAGAATAGTCATATGCGGATGTTCAATATTTCACGTATGGATGATCTTATTGCAAATTCAATGAATATCTTAGAACCAGCTCCAGTGGATGGTGATGGAAATCAACGTGAAGATGTTATGCAGACAAAAGACCCCATCGATTTACTCCTCTTACCAGGACTCGCATTTGATAAATCAGGAAGACGACTAGGCCGAGGGGGAGGTTATTATGATACCTTCCTAAAGAACTACCAAGAGCTTGCGAAGGCACGGAATTGGAAGCAGCCCCTCCTTGTTGCACTGTCCTATTCAGTACAGATAATGGATGAAGGAATTATACCACTCACTCCAAATGATGTCTTAGTCGATGCTCTTGTAACACCATCTGGTGTGATTCCCATCAGCCCAGCTGGATTGGACAAGATGAAGGTATGA 1137 43.8 MSKSGLLQGKPTNLLVNGCQNSAAFGLMNHRSPAGVDVGRSPKARRWAISEAPMIRNYKVLPSAANLLFNRLALSPFQQTLLPLSCRSSGSPKMASNESIKSGNEEQLKPIFEKKRVLRSSVRKALKAMDPSLRSHEGTDCLLIFNDLLRSSENINRIHRTIDCVSSSDVDESPLSTCYSDNAIQSIVLEAPWFKSSQRLCAYVSCSALREVDTSRLLSETLQHPPKDGYPKKIYVPRVEDKNSHMRMFNISRMDDLIANSMNILEPAPVDGDGNQREDVMQTKDPIDLLLLPGLAFDKSGRRLGRGGGYYDTFLKNYQELAKARNWKQPLLVALSYSVQIMDEGIIPLTPNDVLVDALVTPSGVIPISPAGLDKMKV 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12002888 12009595 - Cp4.1LG04g15330.1 Cpe04g01527 469089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01527 378 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 173 376 - -
Cpe04g01527 378 SUPERFAMILY NagB/RpiA/CoA transferase-like 174 368 IPR037171 -
Cpe04g01527 378 TIGRFAM MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 182 362 IPR002698 -
Cpe04g01527 378 Pfam 5-formyltetrahydrofolate cyclo-ligase family 181 362 IPR002698 -
Cpe04g01527 378 Gene3D - 108 365 IPR024185 -
Cpe04g01527 378 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 88 140 - -
Cpe04g01527 378 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE, MITOCHONDRIAL-LIKE ISOFORM X1 173 376 - -
Cpe04g01527 378 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE, MITOCHONDRIAL-LIKE ISOFORM X1 88 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01527 K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] - csv:101211739 516.924
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01527 Cpe18g00816 CCT
Cpe04g01527 Cpe18g00816 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00816 Cpe-Chr18:7581584 Cpe04g01527 Cpe-Chr4:12002888 4.71E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g470 . . Bda06g00567 . . . . . . . Cma10g00162 . Car10g00153 Car11g00125 Sed08g0182 . Cpe04g01527 Bhi02g00377 Tan09g2182 Cmetu02g0955 . Hepe09g0156 . . Cla06g01624 Cam06g1805 Cec06g1856 Cco06g1862 Clacu06g1765 Cmu06g1709 Cre06g2527 . . . Cone19ag0105 . . . . . Blo15g00287 . . Bpe07g00809 . . . . Cmo10g00173 . . . . . . Cpe18g00816 . . . . . . . . . . . . . . Lsi06g01505 Csa01g00194 Chy02g02538 Cme02g01922
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007790 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01527 Cpe_Chr04 FPKM 0.0 0.0 0.229346 0.0 0.0 0.0 0.0 0.0 0.0 0.0