Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01528 ATGGAGCTTCAGAATACAGTAAAAGAAGCCCTAAACGCACTGTACCATCACCCCGACGATGCCTTCCGTATGCAGGCCGATCGATGGCTTCAAGACTTCCAGCGCACTCTCGATGCCTGGCAGGTTGCTGATAATTTGCTTCACGAACCCACCAGCAATTTGGAAACTTTGATCTTTTGCTCTCAAACACTTAGAAGCAAGGTACAGAGAGATTTTGAAGAACTTCCTTCAGAAGCTTTTCGGTCCTTGCGTGACTCATTGAATAATTTGTTGAGAAAATTTCACAAGGGCCCACCTAAAGTCCGAACTCAGGTTAGCATAGCCGTGGCTGCATTAGCAGTACATGTTTCTGCTGATGATTGGGGAGAAGGTGGTATTGTCAATTGGCTCAGGAATGAGATGAACTCACATCCAGAGTATGTACCAGGATTTTTGGAGCTACTGACAGTTTTGCCTGAGGAAGTATACAATTACAAGATCGCAGCTCGCCCGGATAGACGCCGTCAATTTGAAAAGGAACTCACATCCCAAATGGAAGTTACCCTTAATATCTTGACTGCTTGTTTGAATATTAACGAGCTGAAGGAGCAGGTGCTCGAGGCATTTGCTTCTTGGCTTCGATTAAAGCATGGGATTCCAGGATCTATACTTGCTTCACATCCTTTAGTACTCACAGCTTTAGCAAGTTTAAATTCTGAACTTCTCTCAGAGGCATCTGTAAATGTTATTTCTGAATTGATACACTATTCAGCAGCTGGAAGCTCAAGTGGTCTCCCAGCACACATGCCCTTAATTCAAGTAATTGTCCCTCAAGTAATGAGTTTGAAGGCACAACTAAGAGATTCTTCAAAGGATGAAGAAGATGTGAAGGCTATTGCTCGGCTATTTGCTGACATGGGCGATTCATATGTTGAATTGATCGCTACTGGTTCTGATGAATCGATGTTAATAGTGCATGCCCTACTAGAAGTTACTTCCCACCCTGAATATGATATTGCCTCCATGACCTTTAACTTTTGGCATAGCCTTCAGTTGAACTTGACCAAAAGGGATGCATATATTTCTTTTGGCAACGACGCTTCCATTGAAGCTGAGAGGAAAAGGAGGTTACAAATATTTTGTCCAGTCTATGAGTCACTTGTATCCTTGGTTAGTTTCAGAGTTCAATACCCTAATGACTATCAAGACCTTTCTTATGAGGACCTCAAGGAATTCAAGCAGACTAGATATGCTGTTGCAGATGTCTTAATTGATGCAGCATTGGTTTTAGGAGGTGATATGACTCTGAAAATTCTTTACGTGAGGCTTGTGGAGGCTGTTACAAGCTGTGGAAACAGTGAACCAAGTGAATGGCGTCCAGCAGAGGCTTCTTTGTTTTGCATCCGTGCTATATCAAATTATGTTTCAGTTGGTGAAGCAGAAATAATGCCCCAGGTCATGGGCTTACTTCCAAAGCTTCCTCAGCAAGCACAACTACTTCAGACAGTGTGCTACACTGTTGGAGCATACTCGAAGTGGCTTGATGCATCATCAAGTGGGAAATCGATACTACCTTCAGTAATTGATATCCTCATGAGTGGAATGAGCACATCTGAGGATTCTGCAGCTGCTGCAGCTCTGGCATTTAGACATATTTGTGCTGATTGCCGAAGAAAGCTTTGTGGATTTTTAGATGGTCTCTTCCACATATATAATATGACAGTCAACGGCGAAGGTAGTTTGAAGGTGACTGCTGAGGACTCACTGCACCTCGTGGAAGCATTAAGCATGGTTATCACTGAACTTGTGCCCGATCAAGCAAAGAGAGCTCTGGAGGCATTGTGCTTGCCTGTTGTCGCTCCTCTGCAGGAAATTGTCAATCAAGGCCTAGAAGTATTGAATAAGAAGCCTTCTAATGATTTGACAGTCCATATTGACCGGTTTGCATATATATTCAGATATGTAAATCACCCCGAAGCTGTTGCAGATGCAATACAGAGGCTTTGGCCAATTTTTAAAGCCATCTTCGATACCCGTGCTTGGGACATGCGGACAATGGAATCTCTTTGCCGAGCGTGTAAATATGCTGTGAGAACCTCCGGTAGATATATGGGAGTCACAATTGGAGCGATGTTGGAAGAAATTCAAGGTCTATATAAACAGCACCATCAGCCTTGCTTTCTTTATCTATCTAGTGAAGTTATAAAGATTTTTGGATCTGACCCATCTTGCGCAAGCTATCTCCAAAATTTGATCGAAGCATTATTCATGCACACGACACGTCTTCTCACAAATATTCAGGAATTTACTGCTAGGCCTGATATTGCTGATGACTGCTTTCTCTTGGCTTCGAGATGTATACGCTATTGCCCCCAATTATTTATTCCATCTTCAGTGTTCACAGCTTTAATAGATTGTTCAATGGTGGGAATCACAGTACAGCACAGGGAAGCCTCAAATTCAATATTGACTTTCTTGGCTGATGTATTTGATCTTGCAAATTTAAGCGAAAGAGAGTATATATCTAGAAGGGATGCAATAGTTATACCTCGAGGTTGCGTTATCCTTCGAATTTTGATTGCAGCCTTGACGGGGGCATTGCCAAGTTCTCGATTAGAGCCGGTGACTTACACACTACTATCGTTAACTCGAGCTTATAGAGCGCAAGCATTGGAGTGGGCGAAGGAAAGCGTCTCTTTGATTCCATCAACGGCTGTTACTGAAAAAGAGCGGTCAAGATTTTTAAAAGCGTTATCAGATGCAGCATCAGGGTGCGACCTAAATACACTTGCTGTACCAATAGAAGAGCTCTCAGACGTATGTCGACGAAATAGAAACGTTCAGGAGATAGTTCAAGGAGCTTTGAGGCCTCTTGAACTGAATCTGTTGCCTGTATCATAG 2880 42.81 MELQNTVKEALNALYHHPDDAFRMQADRWLQDFQRTLDAWQVADNLLHEPTSNLETLIFCSQTLRSKVQRDFEELPSEAFRSLRDSLNNLLRKFHKGPPKVRTQVSIAVAALAVHVSADDWGEGGIVNWLRNEMNSHPEYVPGFLELLTVLPEEVYNYKIAARPDRRRQFEKELTSQMEVTLNILTACLNINELKEQVLEAFASWLRLKHGIPGSILASHPLVLTALASLNSELLSEASVNVISELIHYSAAGSSSGLPAHMPLIQVIVPQVMSLKAQLRDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVTSHPEYDIASMTFNFWHSLQLNLTKRDAYISFGNDASIEAERKRRLQIFCPVYESLVSLVSFRVQYPNDYQDLSYEDLKEFKQTRYAVADVLIDAALVLGGDMTLKILYVRLVEAVTSCGNSEPSEWRPAEASLFCIRAISNYVSVGEAEIMPQVMGLLPKLPQQAQLLQTVCYTVGAYSKWLDASSSGKSILPSVIDILMSGMSTSEDSAAAAALAFRHICADCRRKLCGFLDGLFHIYNMTVNGEGSLKVTAEDSLHLVEALSMVITELVPDQAKRALEALCLPVVAPLQEIVNQGLEVLNKKPSNDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDTRAWDMRTMESLCRACKYAVRTSGRYMGVTIGAMLEEIQGLYKQHHQPCFLYLSSEVIKIFGSDPSCASYLQNLIEALFMHTTRLLTNIQEFTARPDIADDCFLLASRCIRYCPQLFIPSSVFTALIDCSMVGITVQHREASNSILTFLADVFDLANLSEREYISRRDAIVIPRGCVILRILIAALTGALPSSRLEPVTYTLLSLTRAYRAQALEWAKESVSLIPSTAVTEKERSRFLKALSDAASGCDLNTLAVPIEELSDVCRRNRNVQEIVQGALRPLELNLLPVS 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12010470 12023955 + Cp4.1LG04g15250.1 Cpe04g01528 469090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01528 959 PANTHER TRANSPORTIN MOS14 3 955 - -
Cpe04g01528 959 SUPERFAMILY ARM repeat 1 827 IPR016024 -
Cpe04g01528 959 Pfam Importin-beta N-terminal domain 26 91 IPR001494 GO:0006886|GO:0031267
Cpe04g01528 959 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 3 955 - -
Cpe04g01528 959 Gene3D - 2 930 IPR011989 -
Cpe04g01528 959 Pfam Exportin 1-like protein 98 243 IPR013598 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01528 K15436 TRPO3, MTR10; transportin-3 - csv:101215103 1774.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01528 Cpe18g00817 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00678 Cpe-Chr3:4064908 Cpe04g01528 Cpe-Chr4:12010470 9.32E-33 transposed
Cpe18g00817 Cpe-Chr18:7589752 Cpe04g01528 Cpe-Chr4:12010470 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g420 . . . Bda15g00635 Bpe12g00513 . . . . . Cma10g00279 Cma11g00230 Car10g00262 Car11g00207 Sed08g0303 . Cpe04g01528 Bhi02g00053 Tan09g2002 Cmetu02g1950 . . . . Cla06g01625 Cam06g1806 Cec06g1857 Cco06g1863 Clacu06g1766 . Cre06g2528 . Cone16ag0242 . . . . . . . . . . . . . . . Cmo10g00296 Cmo11g00233 . . . . . Cpe18g00817 . . . . . . . . . . . . . . Lsi06g01506 Csa01g00330 Chy02g02413 Cme02g01923
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008466 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01528 Cpe_Chr04 FPKM 0.509434 0.798428 1.266752 1.044726 1.337133 1.462276 1.845378 0.0 0.094599 0.0