Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01529 ATGGTGTATGCATCTACTCCTAACAAGAACATGCACGCCCTTCTAACAGCCAAACTCACCAAATTGACTCTCCCTTCCTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTTCTTCATCCACGGCCGCCCTTCTTGACTTCGACTTCTCTGACGTATTCGGCCCCACGAATTCCTCTTTACCATCTTTCCCCGGGGACCCACAGCACAATGAACAACAACCAGCGGTCATTCATAACAGATCTCACTCGTTTGTGGGTCCGTCTCCACGGTTAACTCCCCCTTCTTCCCTTTCTTTTTTCCGAGAAGTTAAATCACAGATCGAGGAGGAAGAAGATGACCTTGAAATCTCAACTGGCGATGGAGTTCAGAAGGAGAAGGGGGCGGATGAGAGCGAGAATGACGGTGGAGAAAATTCAGAGGGGAAGGTTGGAGTTGGGGATTTCGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAGGTCTTTCTAGTGAGGAAGAAAGGGGATTCGAAAGGAAACGGTCCCAATAATGATGGGATTTACGCCATGAAAGTGATGAGAAAGGATACCATTATAAAGAAGAATCATGTGGATTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTTCGCACCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGTCCAAATCAAAACTCTATTTGATTCTTGATTTCATAAATGGGGGGCATCTGTTCTTCCATCTGTACCGGCAGGGGATCTTTAGTGAGGATCAGGCAAGGGTCTATGCTGCTGAGATCGTGTCAGCTGTTTCGCATCTTCATGACAGCGGCATTGTGCACCGGGATCTCAAGCCTGAGAACATTCTTATGGATGCTGATGGCCATGTTGTCCTTACGGATTTTGGACTGGCAAAGGAAATTGATGAATCGAGTCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCGGAAATCTTGCTTTCTAAAGGTCACAACAAGGATGCTGATTGGTGGAGTGTCGGAGTTCTTTTGTATGAGATGCTTAGTGGCAAGCCACCATTCACACACGCAAATAGAAAGAAGCTTCAAGAGAGAATAATCAAAGAGAAAGTGAAACTTCCACCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTATTGCAAAAGGATCCTTCTAAAAGATTAGGAAGTGGACCCAACAGAGGGGCGGACATAAAAAATCACAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAAGGGAAATGACTGCACGGCAAATTTTGATAATTGTTGGACGACGATGCCCCCCGACGACTCGCCAGCTCCAACGCCAACCGATGGAGGACACTTCCACGGATACTCGTATGTTGCTCCAGACCCTTGGCTTTCATCATCTGGATAG 1452 46.63 MVYASTPNKNMHALLTAKLTKLTLPSSSSSSSPPPPPPPSSSTAALLDFDFSDVFGPTNSSLPSFPGDPQHNEQQPAVIHNRSHSFVGPSPRLTPPSSLSFFREVKSQIEEEEDDLEISTGDGVQKEKGADESENDGGENSEGKVGVGDFDILRVVGKGAFGKVFLVRKKGDSKGNGPNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVSHPFIVQLRYSFQSKSKLYLILDFINGGHLFFHLYRQGIFSEDQARVYAAEIVSAVSHLHDSGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGKPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKDPSKRLGSGPNRGADIKNHKWFRPVNWKKLECRELQPKFKPDVKGNDCTANFDNCWTTMPPDDSPAPTPTDGGHFHGYSYVAPDPWLSSSG 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12024924 12028317 + Cp4.1LG04g15200.1 Cpe04g01529 469091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01529 483 PANTHER RIBOSOMAL PROTEIN S6 KINASE 8 481 - -
Cpe04g01529 483 ProSiteProfiles Protein kinase domain profile. 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01529 483 CDD STKc_AGC 156 414 IPR045270 GO:0004674|GO:0005524
Cpe04g01529 483 Gene3D Transferase(Phosphotransferase) domain 1 238 433 - -
Cpe04g01529 483 Pfam Protein kinase C terminal domain 435 472 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cpe04g01529 483 Pfam Protein kinase domain 151 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01529 483 ProSitePatterns Protein kinases ATP-binding region signature. 156 187 IPR017441 GO:0005524
Cpe04g01529 483 SMART serkin_6 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01529 483 MobiDBLite consensus disorder prediction 110 144 - -
Cpe04g01529 483 SMART pkinase_C_6 415 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe04g01529 483 MobiDBLite consensus disorder prediction 119 139 - -
Cpe04g01529 483 SUPERFAMILY Protein kinase-like (PK-like) 147 471 IPR011009 -
Cpe04g01529 483 MobiDBLite consensus disorder prediction 54 75 - -
Cpe04g01529 483 MobiDBLite consensus disorder prediction 19 75 - -
Cpe04g01529 483 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 481 - -
Cpe04g01529 483 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe04g01529 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Cpe04g01529 483 Gene3D Phosphorylase Kinase; domain 1 149 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01529 Cpe-Chr4:12024924 Cpe13g00064 Cpe-Chr13:499080 1.60E-68 dispersed
Cpe09g00390 Cpe-Chr9:2390952 Cpe04g01529 Cpe-Chr4:12024924 7.12E-62 dispersed
Cpe20g00098 Cpe-Chr20:517144 Cpe04g01529 Cpe-Chr4:12024924 2.56E-11 dispersed
Cpe18g00818 Cpe-Chr18:7606159 Cpe04g01529 Cpe-Chr4:12024924 2.05E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62379 PF00069 Pkinase 3.90E-72 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01529 K04688 - csv:101214867 775.778