Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01529 | ATGGTGTATGCATCTACTCCTAACAAGAACATGCACGCCCTTCTAACAGCCAAACTCACCAAATTGACTCTCCCTTCCTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTTCTTCATCCACGGCCGCCCTTCTTGACTTCGACTTCTCTGACGTATTCGGCCCCACGAATTCCTCTTTACCATCTTTCCCCGGGGACCCACAGCACAATGAACAACAACCAGCGGTCATTCATAACAGATCTCACTCGTTTGTGGGTCCGTCTCCACGGTTAACTCCCCCTTCTTCCCTTTCTTTTTTCCGAGAAGTTAAATCACAGATCGAGGAGGAAGAAGATGACCTTGAAATCTCAACTGGCGATGGAGTTCAGAAGGAGAAGGGGGCGGATGAGAGCGAGAATGACGGTGGAGAAAATTCAGAGGGGAAGGTTGGAGTTGGGGATTTCGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAGGTCTTTCTAGTGAGGAAGAAAGGGGATTCGAAAGGAAACGGTCCCAATAATGATGGGATTTACGCCATGAAAGTGATGAGAAAGGATACCATTATAAAGAAGAATCATGTGGATTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTTCGCACCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGTCCAAATCAAAACTCTATTTGATTCTTGATTTCATAAATGGGGGGCATCTGTTCTTCCATCTGTACCGGCAGGGGATCTTTAGTGAGGATCAGGCAAGGGTCTATGCTGCTGAGATCGTGTCAGCTGTTTCGCATCTTCATGACAGCGGCATTGTGCACCGGGATCTCAAGCCTGAGAACATTCTTATGGATGCTGATGGCCATGTTGTCCTTACGGATTTTGGACTGGCAAAGGAAATTGATGAATCGAGTCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCGGAAATCTTGCTTTCTAAAGGTCACAACAAGGATGCTGATTGGTGGAGTGTCGGAGTTCTTTTGTATGAGATGCTTAGTGGCAAGCCACCATTCACACACGCAAATAGAAAGAAGCTTCAAGAGAGAATAATCAAAGAGAAAGTGAAACTTCCACCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTATTGCAAAAGGATCCTTCTAAAAGATTAGGAAGTGGACCCAACAGAGGGGCGGACATAAAAAATCACAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAAGGGAAATGACTGCACGGCAAATTTTGATAATTGTTGGACGACGATGCCCCCCGACGACTCGCCAGCTCCAACGCCAACCGATGGAGGACACTTCCACGGATACTCGTATGTTGCTCCAGACCCTTGGCTTTCATCATCTGGATAG | 1452 | 46.63 | MVYASTPNKNMHALLTAKLTKLTLPSSSSSSSPPPPPPPSSSTAALLDFDFSDVFGPTNSSLPSFPGDPQHNEQQPAVIHNRSHSFVGPSPRLTPPSSLSFFREVKSQIEEEEDDLEISTGDGVQKEKGADESENDGGENSEGKVGVGDFDILRVVGKGAFGKVFLVRKKGDSKGNGPNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVSHPFIVQLRYSFQSKSKLYLILDFINGGHLFFHLYRQGIFSEDQARVYAAEIVSAVSHLHDSGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGKPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKDPSKRLGSGPNRGADIKNHKWFRPVNWKKLECRELQPKFKPDVKGNDCTANFDNCWTTMPPDDSPAPTPTDGGHFHGYSYVAPDPWLSSSG | 483 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12024924 | 12028317 | + | Cp4.1LG04g15200.1 | Cpe04g01529 | 469091 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01529 | 483 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 8 | 481 | - | - | |
Cpe04g01529 | 483 | ProSiteProfiles | Protein kinase domain profile. | 150 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe04g01529 | 483 | CDD | STKc_AGC | 156 | 414 | IPR045270 | GO:0004674|GO:0005524 | |
Cpe04g01529 | 483 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 433 | - | - | |
Cpe04g01529 | 483 | Pfam | Protein kinase C terminal domain | 435 | 472 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Cpe04g01529 | 483 | Pfam | Protein kinase domain | 151 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe04g01529 | 483 | ProSitePatterns | Protein kinases ATP-binding region signature. | 156 | 187 | IPR017441 | GO:0005524 | |
Cpe04g01529 | 483 | SMART | serkin_6 | 150 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe04g01529 | 483 | MobiDBLite | consensus disorder prediction | 110 | 144 | - | - | |
Cpe04g01529 | 483 | SMART | pkinase_C_6 | 415 | 474 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cpe04g01529 | 483 | MobiDBLite | consensus disorder prediction | 119 | 139 | - | - | |
Cpe04g01529 | 483 | SUPERFAMILY | Protein kinase-like (PK-like) | 147 | 471 | IPR011009 | - | |
Cpe04g01529 | 483 | MobiDBLite | consensus disorder prediction | 54 | 75 | - | - | |
Cpe04g01529 | 483 | MobiDBLite | consensus disorder prediction | 19 | 75 | - | - | |
Cpe04g01529 | 483 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 8 | 481 | - | - | |
Cpe04g01529 | 483 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 415 | 482 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cpe04g01529 | 483 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 277 | 289 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe04g01529 | 483 | Gene3D | Phosphorylase Kinase; domain 1 | 149 | 456 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01529 | Cpe-Chr4:12024924 | Cpe13g00064 | Cpe-Chr13:499080 | 1.60E-68 | dispersed | |
Cpe09g00390 | Cpe-Chr9:2390952 | Cpe04g01529 | Cpe-Chr4:12024924 | 7.12E-62 | dispersed | |
Cpe20g00098 | Cpe-Chr20:517144 | Cpe04g01529 | Cpe-Chr4:12024924 | 2.56E-11 | dispersed | |
Cpe18g00818 | Cpe-Chr18:7606159 | Cpe04g01529 | Cpe-Chr4:12024924 | 2.05E-14 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62379 | PF00069 | Pkinase | 3.90E-72 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01529 | K04688 | - | csv:101214867 | 775.778 |