Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01534 ATGGGCAGATCGATATCAGTGGGTGAGAGATCAATATCTTTTCGGGATGTGGGTTTGCTTCGATTAGCGATGGGAAGCGCAGAGGAGAAAGTTGTTGCCGTGATCATGGTCGGCGGTCCCACTAAAGTTAGAGATAATGTCCTTCAAATGCTCTGGCTTATACCCGACCTATTGGCGAGTGGAGATGGTACGAAAGACGCTATCATCACTGCTTATGTTTATATTCATCCTTCAGCTAAACTACATCCAACTGCTGAGATTGGCCCTAATGTTTCGATGTCTGCTAACGCTCGGATTGGAGCTGGTTCTAGGCTCATTGGTTGTATTGTTCTTGACGAGGTCGAAATTAAGGTAGACGAAGACTCCAGAGTCAAAAGAGCGAGTCTTCGTCAAGCTGCAGCAGCAGAGGAGGATAGCAGGAGGAGGCGAGACCATCATCGGAGGCTGAGGAAAATGGTTCACGCCAGGCTTGAAGACGCCACTGGTTTTAAGGCGGAGCTCATCGGAAGCGCCTGGACGGCCGCCGTAAAAGCTCACAGGTATGCAGAGAAGCCATTTCTCGTTGAAACTAGCAGCAGAGACTTTTCCATCATCAGTTTCCCCGGATCTTGGTCGGCGGAAGGCTGGTTCTCCGGTTCCGATTCATGTTTTGGAGAAACGAAGATCAACACCCAACTGTTTCCGTCCATCAGGAGCATCGGCGTTAACGATTATGCGCTCGTCAACTCCGCGTTTCTCCACAGATTTGAAGCCATTTTAGGGAAGCTGATCAAGGAGGTCATGCGAGTGAGTAAGGCAGTGGTATTTACTGGCCACTCTGCAGGCGGTCCGATAGCCATTCTTGCAACCATTTGGCTACTGGAAGAGCAAAGAAAGAACTCAAACTCAAACACAGACACCAACTCCTCCACTCCTCCAAAATGCATCACATTTGGATCTCCCCTTGTTGGTAATTTCATTCTCTCCCATGCTCTTAAGAGGGAGAAATGGTCTATCCATTTCATACACTTCATCATGAGATACGACATTGTCCCACGAATCCATCTCGCTCCCCTACCTTCCTTGCAGCCAGTACAACTGCAAACCATCCTCAACTCCTTGAACTCGAGATCTCTCGAATCGTCGTCAAATGGGGATGTAACTACTGCATTCTTCACGACAGTGATGAGCAATGCATCGAGTGTGACAAACAATGCAGCCTGCCATCTTATGGAAAGCACTAGTCTTTTGCTAGAAAACTTGAGAAGCTTTATCAAATTGAGTCCTTATAGCCCTTTTGGGACTTACATTTTCTGTACCGAGAGTGATGAGGTGGTGGTGCTGACCAACCCGCATGCTGTTTTACAAATATTATTCTACTCCTGTCAGTTGAACTCTGAGAGCGAACGGGGTCAGGTAGCTCATCAGAGTTTAAAGGACCATTGGGAGTATGAATCTAAAATGCACCAAAACTTGGAGCTCCAGCATGCTGTTCGTCTGGATGAATTGCACAAGCTTCCTCTGTCTTTGACTGGAAGGAGCACGCCAATCACACAAGCCTTGAATCGACTCGGCCTAAGTACGAGGGCTTTATTGAATCTTCGTGCAGCTGGCACATACGAAGAGAAAAAGACAAAAAACCAAGAAAGGATGGAAGCAAAGAAGCAATATATCGAGCAAGGATTGAATTGGCTAGAAGAAAACTACAGAGCTGTATGTAGGGTTGATGGTATGGGATATTATGATGCATTCAAACGCCAAAAGAATGACACAGACTTCAAAGCCAATATCAAAAGGCTTGAGCAAGCAGGTATATGGGATGAGATCCTAGGAATGCTCAAAATGTATGAGCTCCCTGATGAATTTGAAGGCAATGACGAATGGATACAACTTGGAACCAAGTATCGCCGTCTCGTTGAGCCTTTAGATATTGCTAATTACTACAGACACTCTAAGAATGATGACACTGGTCCTTATCTGAAAATGGGAAGGCCGAACCGTTACAGATTTACACAAAGATGGCTCGAACATAATCGAAAGATGACAGAATACAGTGAAGAATCGATTCTTTGGGCAATGGTGGAGGAGCTTCAAATCCAAACCCAAACCAGAATGTATGTAGAGCATTCAAGAGAAATCATAGAGCTGGAGAAGAAGATGAAGAGATGGGTCAATGAGATTGGAGAGGATATGTTGTTAAAGAAATCTACGTTCATGGAGTGGTGGAAGACACTTCCTGAACAACACAGATCACAGTCTTGTCTTATGGATGATATTCAGAGGATGGAAAAAAGAGACGATGCTATGAACTGGGAGTAG 2298 45.47 MGRSISVGERSISFRDVGLLRLAMGSAEEKVVAVIMVGGPTKVRDNVLQMLWLIPDLLASGDGTKDAIITAYVYIHPSAKLHPTAEIGPNVSMSANARIGAGSRLIGCIVLDEVEIKVDEDSRVKRASLRQAAAAEEDSRRRRDHHRRLRKMVHARLEDATGFKAELIGSAWTAAVKAHRYAEKPFLVETSSRDFSIISFPGSWSAEGWFSGSDSCFGETKINTQLFPSIRSIGVNDYALVNSAFLHRFEAILGKLIKEVMRVSKAVVFTGHSAGGPIAILATIWLLEEQRKNSNSNTDTNSSTPPKCITFGSPLVGNFILSHALKREKWSIHFIHFIMRYDIVPRIHLAPLPSLQPVQLQTILNSLNSRSLESSSNGDVTTAFFTTVMSNASSVTNNAACHLMESTSLLLENLRSFIKLSPYSPFGTYIFCTESDEVVVLTNPHAVLQILFYSCQLNSESERGQVAHQSLKDHWEYESKMHQNLELQHAVRLDELHKLPLSLTGRSTPITQALNRLGLSTRALLNLRAAGTYEEKKTKNQERMEAKKQYIEQGLNWLEENYRAVCRVDGMGYYDAFKRQKNDTDFKANIKRLEQAGIWDEILGMLKMYELPDEFEGNDEWIQLGTKYRRLVEPLDIANYYRHSKNDDTGPYLKMGRPNRYRFTQRWLEHNRKMTEYSEESILWAMVEELQIQTQTRMYVEHSREIIELEKKMKRWVNEIGEDMLLKKSTFMEWWKTLPEQHRSQSCLMDDIQRMEKRDDAMNWE 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12042312 12048967 - Cp4.1LG04g15340.1 Cpe04g01534 469096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01534 765 Coils Coil 692 719 - -
Cpe04g01534 765 Pfam Lipase (class 3) 202 348 IPR002921 GO:0006629
Cpe04g01534 765 PANTHER PROTEIN EDS1-RELATED 152 752 IPR044214 GO:0006952
Cpe04g01534 765 SUPERFAMILY Trimeric LpxA-like enzymes 62 117 IPR011004 -
Cpe04g01534 765 SUPERFAMILY alpha/beta-Hydrolases 191 352 IPR029058 -
Cpe04g01534 765 Pfam Enhanced disease susceptibility 1 protein EP domain 560 749 IPR041266 -
Cpe04g01534 765 Gene3D Hexapeptide repeat proteins 70 133 - -
Cpe04g01534 765 Gene3D alpha/beta hydrolase 173 488 IPR029058 -
Cpe04g01534 765 PANTHER PROTEIN EDS1-RELATED 152 752 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01534 K18875 EDS1; enhanced disease susceptibility 1 protein - csv:101214385 883.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00542 Cpe-Chr3:3171467 Cpe04g01534 Cpe-Chr4:12042312 3.06E-21 dispersed
Cpe03g00547 Cpe-Chr3:3205371 Cpe04g01534 Cpe-Chr4:12042312 2.88E-25 dispersed
Cpe04g00089 Cpe-Chr4:826127 Cpe04g01534 Cpe-Chr4:12042312 3.50E-21 dispersed
Cpe19g00102 Cpe-Chr19:801216 Cpe04g01534 Cpe-Chr4:12042312 2.62E-47 transposed
Cpe18g00822 Cpe-Chr18:7632952 Cpe04g01534 Cpe-Chr4:12042312 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g682 . . Bda06g00574 . Bpe12g00576 Bpe13g00205 Bma06g00254 . . . . . . . Sed08g0170 . Cpe04g01534 Bhi02g00389 Tan09g2197 Cmetu05g0932 . Hepe09g0166 . . Cla06g01633 Cam06g1816 Cec06g1866 . Clacu06g1774 Cmu06g1716 Cre06g2536 . . Cone13ag0117 Cone19ag0119 . . . . Blo13g00041 . Bda11g01604 . Bpe07g00816 . . Bma08g00186 . Cmo10g00163 . . . . . . . . . . . . . . . . . . . . . Lsi06g01515 Csa01g00184 Chy02g02549 Cme02g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004701 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 6 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01534 Cpe_Chr04 FPKM 34.205009 35.962299 12.133764 12.707753 86.637657 90.269592 87.274055 30.63908 30.073322 30.366009