Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01536 ATGGGTGGCAATGGCAAGTTCCGGTGGAAATCCATCTTCTCCCATCGTCGTTCTTCTTCTAGTTTTAGGGTCGAATCCAAGGAGCCTCCTAACGAGTTCATTTGCCCAGTTTCCGGATCCTTAATGGCCGACCCGGTTGTTGTCTCTTCCGGCCAGACCTTTGAGCGTGTTTCTACGCAGGTTTGCAGGAGTTTGGGGTTCTCCCCTGTGTTAGAGGATGGCTCGACCCCAGATTTCTCCACTGTAATTCCGAATTTGGCTATGAAGAAGACGATTCTCCATTGGTGTGAGGAGTCCGGTGTCAGGAATTCTCAGGCGCCTGATTACGACTCCGTGGAGAAGATTGTTAGAGCATTGATGGAGGAGAAGGACAAGGAGAAGCCTCAGGTTGGAATCAGGGATTCGTCGGATAGGGATTTGTTAGCGGGGGTATCGGATTTGCCGCCGGTGAATTTTTCGCACGCCGTGACGGAGTTAGGCCACCGTCCAGAACGTTACTACACGAGCTCGTCGGAGGAATCGGTCATCGTCGGAGGGAGTCCGGGGACTCCGCTGCCGTTCACGACTCGACCTGGGTGTTATTCCTCTTCGTCTTCTTCCTGTGAAGTTGTTGAAAACGAAGCGCTCATCCAAACCCTAGGCCCTAATTCATCGATACCCCAAGACGAGAAGGAATTGTTATCGAAGCTCACGAGCCCCGATGTGTTTAAGCAAGAAGAAGGCGTTATTTCGCTTAGAAAAATCACGAAAGAAAATGAGAAAATTAGGGTTTCGCTTTGTACGCCTCGGATTCTCTTATCTCTCCGCCCTCTGATTACATCGAGATACTCCGCCGTACAAATCAACGCCCTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCTAAACAAGCAAAAGATCGCCCGGTCAGGTCTGGTTCCGAACTTAATCGACGCGCTAAAAGGAGGACATGCCGAAGCGCAAGAACACGCCGCCGGAGCACTCTTCAGCCTAGCCTTGGAGGACGAAAATCGGATGACAATCGGAGTTCTAGGCGCACTGCCGCCACTCCTTTACGCACTCCGATCGACTAGCGAGATAACTCGAAAGGATTCCGCTCTGTGTCTATACAACCTAACAATGATACAGAGCAACCGAGTGAAGCTCATCAAACTCGGCGCCGTAACGACTCTACTCTCCATGGTGAAATCAGGTAGCTCAATGAATTGGCTGCTGCTGATCCTCTGCAACATCGCCGTGTGCCAGGAGGGAAGATCGGCAATGCTAGACGCCAACGCCGTCGGGCTCTTGGTCGGAATGCTGAGGGAGAAAGAATTGTACTCGAAATCAACTCGCGAGAATTGCGTTGCGGCATTGTACGCACTCAGCTATGGAAGTATGAGGTTCAAAGGACTGGCGAAGGAAGCCGGAGCAATGGAGGTTTTGAGGGAGATTGCTGAAAGAGGAAGTGATAGAGCGAGAGAGAAGGCGAAGAAGATATTGGAGAGGATGAAGATGAGAGGGACATTCAATGAAGACGATGACGACGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGGCAATGGCGGTGAGTCGAGTTTCGAAAGAGGCGGACTCAGTTTGAGTCGGTACCGAAACGGCGGTGGAAGAAGTCCCAGATCGGCTAATACGACGCCGTTTTGA 1665 51.11 MGGNGKFRWKSIFSHRRSSSSFRVESKEPPNEFICPVSGSLMADPVVVSSGQTFERVSTQVCRSLGFSPVLEDGSTPDFSTVIPNLAMKKTILHWCEESGVRNSQAPDYDSVEKIVRALMEEKDKEKPQVGIRDSSDRDLLAGVSDLPPVNFSHAVTELGHRPERYYTSSSEESVIVGGSPGTPLPFTTRPGCYSSSSSSCEVVENEALIQTLGPNSSIPQDEKELLSKLTSPDVFKQEEGVISLRKITKENEKIRVSLCTPRILLSLRPLITSRYSAVQINALASLVNLSLEKLNKQKIARSGLVPNLIDALKGGHAEAQEHAAGALFSLALEDENRMTIGVLGALPPLLYALRSTSEITRKDSALCLYNLTMIQSNRVKLIKLGAVTTLLSMVKSGSSMNWLLLILCNIAVCQEGRSAMLDANAVGLLVGMLREKELYSKSTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIAERGSDRAREKAKKILERMKMRGTFNEDDDDDEEEEEEEEEDGNGGESSFERGGLSLSRYRNGGGRSPRSANTTPF 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12057760 12059424 - Cp4.1LG04g15320.1 Cpe04g01536 469098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01536 554 CDD RING-Ubox 34 70 - -
Cpe04g01536 554 MobiDBLite consensus disorder prediction 497 554 - -
Cpe04g01536 554 MobiDBLite consensus disorder prediction 505 523 - -
Cpe04g01536 554 Gene3D - 221 499 IPR011989 -
Cpe04g01536 554 Pfam U-box domain 30 98 IPR003613 GO:0004842|GO:0016567
Cpe04g01536 554 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Cpe04g01536 554 PANTHER U BOX DOMAIN-CONTAINING 1 540 - -
Cpe04g01536 554 SUPERFAMILY ARM repeat 225 497 IPR016024 -
Cpe04g01536 554 SMART arm_5 334 374 IPR000225 GO:0005515
Cpe04g01536 554 SMART arm_5 414 457 IPR000225 GO:0005515
Cpe04g01536 554 SMART arm_5 293 333 IPR000225 GO:0005515
Cpe04g01536 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515
Cpe04g01536 554 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 540 - -
Cpe04g01536 554 SUPERFAMILY RING/U-box 16 101 - -
Cpe04g01536 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 101 IPR013083 -
Cpe04g01536 554 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01536 Cpe-Chr4:12057760 Cpe13g00921 Cpe-Chr13:7813731 1.26E-171 dispersed
Cpe01g02363 Cpe-Chr1:19763882 Cpe04g01536 Cpe-Chr4:12057760 2.91E-166 wgd
Cpe18g00826 Cpe-Chr18:7657630 Cpe04g01536 Cpe-Chr4:12057760 0 wgd
Cpe20g00225 Cpe-Chr20:1295346 Cpe04g01536 Cpe-Chr4:12057760 0 wgd
Cpe04g01536 Cpe-Chr4:12057760 Cpe09g01045 Cpe-Chr9:9139986 1.46E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01536 - - csv:101213423 793.112