Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01541 ATGAATTCATCTCAGCTCAGCTCAAATTCTTCTTTGAAAATGGCGTTTTTAGGGACAACCCAGAAGTGTAAGACATGTGACAAGACTGTTTACTTGGTTGATCAGCTCACTGCAGATAGCAAAGTCTATCACAAGGCCTGTTTCAGGTGCCACCATTGCAACAACACTCTAAGGCTGTTCAATTACTCTTCCTTTGAAGGTGTTTTGTATTGCAAACCTCACTTTGATCAGTTGTTCAAGATGACTGGAAGTTTGGAAAAAAGTTTTGAAGGAACTCCAAGAACTGCTAGGAAACACAGATCTACTAATCAGGGCCAATCCAATAGCAAAGTGTCAAGCTTTTTTGCTGGAACTCAAGACAAATGTGTTGCTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTAGATAGTAAATCATACCACAGAAGTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACATGAACAACGACTATACTGTAGGCATCATCACAACCAGCTCTTCAAACACAAGGGAAATTTCACCCAACTTGACATCCATCATGAACATATTAAAGGGACTCGCTAA 597 40.54 MNSSQLSSNSSLKMAFLGTTQKCKTCDKTVYLVDQLTADSKVYHKACFRCHHCNNTLRLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTARKHRSTNQGQSNSKVSSFFAGTQDKCVACKKTVYPIEKVAVDSKSYHRSCFRCSHGGCVISPSNYIAHEQRLYCRHHHNQLFKHKGNFTQLDIHHEHIKGTR 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12078964 12080799 + Cp4.1LG04g15450.1 Cpe04g01541 469103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01541 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 186 - -
Cpe04g01541 198 ProSiteProfiles LIM domain profile. 120 180 IPR001781 -
Cpe04g01541 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 89 - -
Cpe04g01541 198 ProSitePatterns LIM zinc-binding domain signature. 23 57 IPR001781 -
Cpe04g01541 198 PANTHER OS06G0237300 PROTEIN 15 192 IPR045268 GO:0051015
Cpe04g01541 198 SMART lim_4 22 74 IPR001781 -
Cpe04g01541 198 SMART lim_4 121 173 IPR001781 -
Cpe04g01541 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 114 147 - -
Cpe04g01541 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 48 - -
Cpe04g01541 198 Gene3D Cysteine Rich Protein 18 87 - -
Cpe04g01541 198 Gene3D Cysteine Rich Protein 116 186 - -
Cpe04g01541 198 MobiDBLite consensus disorder prediction 90 111 - -
Cpe04g01541 198 Pfam LIM domain 122 177 IPR001781 -
Cpe04g01541 198 Pfam LIM domain 23 77 IPR001781 -
Cpe04g01541 198 ProSiteProfiles LIM domain profile. 21 81 IPR001781 -
Cpe04g01541 198 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 15 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01541 K09377 CSRP; cysteine and glycine-rich protein - csv:101212133 352.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01541 Cpe18g00829 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01541 Cpe-Chr4:12078964 Cpe18g00829 Cpe-Chr18:7681935 4.01E-18 dispersed
Cpe04g01541 Cpe-Chr4:12078964 Cpe06g00204 Cpe-Chr6:1091380 1.26E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g698 Blo04g00744 . . . Bpe12g00582 . . . . . Cma10g00145 . Car10g00136 Car11g00110 Sed08g0155 . Cpe04g01541 Bhi02g00404 Tan09g2210 Cmetu02g0989 . Hepe09g0177 . . Cla06g01642 Cam06g1826 Cec06g1874 Cco06g1881 Clacu06g1785 Cmu06g1726 Cre06g2545 . . . Cone19ag0128 . . . . Blo13g00045 . . Bda14g00823 . . Bma03g00797 Bma08g00180 . Cmo10g00152 . . . . . . Cpe18g00829 . . . . . . . . . . . . . . Lsi06g01528 Csa01g00174 Chy02g02557 Cme02g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49449 PF00412 LIM 1.10E-10 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01541 Cpe_Chr04 FPKM 3.90668 4.494767 15.384071 15.583272 21.593218 21.801184 22.025494 7.299907 6.692255 7.466038