Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01543 ATGGACAGTTCTCAAATTCTCTCGCACTACGCACTCCCGCGTTACCACCGCTACCTCGTCGCCGTTTACTCGCCGGAACCCAGATCGTTGCTGCTTCCTGGGTCCAAGCCTTGTTTTAGCATCCGTCGAACTGTAATAAGATTACGACCTTCAGAATCGGAGGTGAGTGAATCGGAGCCTTTGCCGGCATTTTGGGACAGACGTTGTTTTCTTTTCTTCGCGATCTCCTTCTCAGTTGTTGCTGCTCGCCGGTACGGCCCCATCGGAATCTGTGTAACCGGACGCCGCCTCACGCCAGTCTTCTTCGGCAGTCCCTCATTGCTTGGTCTCGTTCTTCAAACTCACTGTTTTAGCTCTGAATTCAAGCAGCATTGGTGCAGCATGTTTCTGACACGAATATTTGGGCGGACATTTCTAGCTGCTGCTAGATCAGAAGCTTCTGCTGCTACAGCTGCTGCTGGCTCTACAGCTAGGACAGGGTACAATCCGCTCGAGGAGTTCTTTGAGGTACATAGAAGTCCAGAAGATGACAAACCTGTTGTATATGAGGGTCTACTCACTCATGGGAATGAATACAAGTTGTTTAGATACAGCCACCATGCTACAAGAAAATACCCTCCTTGTTGTGCATGGAGTCTGAAGGCATCTTTTAAGAAAACAAGATTAGAAGTGGCCATGGACTACCCAGTACTTGGTCAAAGTTCAAATAATTGGTCGCTGGGGACTCTGGATTCGGCTTCGTTGATAAAACATAATAACATATATATTGAGTTTCATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTCAAGTCTTGGGACGATCTTAATAAGTTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGGCAGATGCTTAACGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAACAGGTACTTACGGAGAGAGCCATCGATGAACCAGATCCTCGGAGATCCGCAGAGATGAAGAGGATGATATTGAAAGCTTTGGAGATGGTTATGAATTGTGGGAACATGATGATGGAGAAGATTATTGTAGAAGATTTAGATGTGATATTTGCCACGTGGAGCAATGTTATTGGAGCGATGTACTCAAAACTCACTCAGGAAATTGTACATTATATGGGTTTTGGTGACAGACAGAGAGGGTCGAGGGTCACCGACTGGGTAACCCAATCACCCCTTGGAAGAGAGTGCCCGTATGGGAAAGGGGTTGTGGGACCCATAAGCATTTTGGGGCACGTTGTACCAAGTCACTTGGGGCTGTGGGGGGGAGTTGCATCACCGCCATGTCTATTTATCATTTACTCAGCCCAAATTGCCCGATCTGCCCGGGACTGCCCGGTCTCGGCTCCCTACCAAGTTGAAAGGCGGCTCGAAATCTTTAATCGTCTTCTTCTTGCGTCTGCTTGGATCGGGACCTTAATTGGATCAGTCTTGAATCGTATTTATTGGTACGCCGGTGTGGGATTTCCGAAATCCCTCTTTCCTCTATCGGGACATGATACCAGGGCAACGTTTTGTATTGATCTAGGGTTTCTCGGTAAGCGGATAGTTTTGAATTGCCTTTCGTCTGATGAATTAGGGTTAGGATTGATGGTACTCGTTCGGCGTGAAGGTGGGATCGAGGTTGGAATTGGGGAAAATGCAAGGCTATGCATGGGCGTCGAGGTGAGAACTGGAAACGGAGTCGGCACATGTGGACAGTCCCCACACGCGGCACTTCTTTTTGATGACTCACTATTCTCACTATTCTCTACTATCCTTGAACAGGGTGGACGCAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCAAAGACTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACTACTGGTAAGGAGAATAAATTGAAGTTGGGTGTGAATTGGCTTTATCGATCTTCTGAATTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCCAACGAAGTGTTCTATTCCTTTCACAAGGATGAAATTCCTGCTGCATCTTTACTCCACCCGTGTAAAGTTGCATTCCTTCCTAAGGACATCAAACTTCCATCAGGAATTTCGTCATTTGTGTGCCGGAGAGTGAACATCGGGAAGAAGTGGATCAATTATTAG 2175 46.94 MDSSQILSHYALPRYHRYLVAVYSPEPRSLLLPGSKPCFSIRRTVIRLRPSESEVSESEPLPAFWDRRCFLFFAISFSVVAARRYGPIGICVTGRRLTPVFFGSPSLLGLVLQTHCFSSEFKQHWCSMFLTRIFGRTFLAAARSEASAATAAAGSTARTGYNPLEEFFEVHRSPEDDKPVVYEGLLTHGNEYKLFRYSHHATRKYPPCCAWSLKASFKKTRLEVAMDYPVLGQSSNNWSLGTLDSASLIKHNNIYIEFHGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMKRMILKALEMVMNCGNMMMEKIIVEDLDVIFATWSNVIGAMYSKLTQEIVHYMGFGDRQRGSRVTDWVTQSPLGRECPYGKGVVGPISILGHVVPSHLGLWGGVASPPCLFIIYSAQIARSARDCPVSAPYQVERRLEIFNRLLLASAWIGTLIGSVLNRIYWYAGVGFPKSLFPLSGHDTRATFCIDLGFLGKRIVLNCLSSDELGLGLMVLVRREGGIEVGIGENARLCMGVEVRTGNGVGTCGQSPHAALLFDDSLFSLFSTILEQGGRRISVGDCALFKPPKDSPPFIGIIRWLTTGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDIKLPSGISSFVCRRVNIGKKWINY 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12097234 12108852 + Cp4.1LG04g15460.1 Cpe04g01543 469105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01543 724 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 259 327 IPR010729 GO:0003735|GO:0005761|GO:0006412
Cpe04g01543 724 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 604 715 - -
Cpe04g01543 724 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 604 715 - -
Cpe04g01543 724 Pfam BAH domain 614 695 IPR001025 GO:0003682
Cpe04g01543 724 SMART BAH_4 612 723 IPR001025 GO:0003682
Cpe04g01543 724 CDD Ribosomal_L29_HIP 266 327 - -
Cpe04g01543 724 Gene3D - 241 335 IPR038340 -
Cpe04g01543 724 ProSiteProfiles BAH domain profile. 612 724 IPR001025 GO:0003682
Cpe04g01543 724 Gene3D - 605 722 IPR043151 -
Cpe04g01543 724 SUPERFAMILY Ribosomal protein L29 (L29p) 263 330 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01543 - - - bhj:120071278 216.468
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01543 Cpe18g00833 CCT
Cpe04g01543 Cpe18g00833 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01543 Cpe-Chr4:12097234 Cpe18g00833 Cpe-Chr18:7702385 2.71E-65 dispersed
Cpe18g00832 Cpe-Chr18:7698695 Cpe04g01543 Cpe-Chr4:12097234 5.55E-11 wgd
Cpe04g00566 Cpe-Chr4:6081575 Cpe04g01543 Cpe-Chr4:12097234 7.53E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011635 2 2 1 1 1 1 1 1 1 1 0 1 0 1 1 0 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01543 Cpe_Chr04 FPKM 33.653828 34.747974 31.478649 32.934849 31.47603 31.244522 33.054852 33.95105 32.44648 36.808533