Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01547 ATGCTGTCGAGTTCTTGCTTGAGTTTGTTAGAGTTGTCATCTGTGGATATGTTGGATTTTCCTCCTACACCGAGAAATGTTCCACGGGCGATGACTGCGTCGGGGATAGTATCCGATAAATGTCGAGGGAGGACGATAATAGTGGCAAATTTGCTTCCTGTTCATGCTAAAAAGGATCCAGATTCTGGGAGATGGAACTTTAGCTTCGACGACGATTCGCTTTTGCTTCAGCTGAAAGATGGATTCTCATCAGATGTTGATGTTGTTTATGTTGGATCATTGAAGGTTGATGTCAATGTCCAAGAACAAGAAGAGATTTCGCAGAAACTACTGGAGGAATTCAACTGTGTACCGACTTTCGTCCCGACGTCCCTTCAGAAACAGTTCTATCATGGATTCTGTAAACAAAATCTATGGCCACTTTTCCATTACATGATGCCGATTTCGTCTTATCACGGATCTCGCTTTGATCGACCTCTTTGGTTAGCGTATCTTTCAGCTAACAAAAGGTTTGCTGATAAAGTTATGGAGGTGATCAATTTGGAAGAAGATTATGTATGGATTCATGACTATCACCTTATGGTTCTCCCTACCTTTTTGAGAAAACGTTACAGTCGAATTAAGCTCGGATTCTTTCTTCATAGTCCGTTTCCCTCATCAGAGATCTTCCGAACTCTGCCTGTTAGAGATGAGATTCTGAAAGCGTTACTTAACACGGACCTAATCGGTTTCCATACGTTCAGCTATGCTCATCACTTTCTATCATGTTGTAGTAGACTGCTCGGTTTGGAGTATGAATCGAAACGTGGCTATCTCACGCTTGAGTATTTCGGACGTACGATATACATCAAGATTTTGCCTGTTGGAGTTCATATGGGTCGACTCGAATTCGCATTAAATCATTCCCACACTTCAATCAAAGCCAAGGAGATCAAAGAAGACTTCAAAGGAAAGAAGGTTATTCTTGGTGTTGATGATATGGACATATTTAAAGGTATTGGTCTGAAGTTATTAGCTATGGAAAAGCTGTTGAACCAGCATCCGGAGTTGCGGGGCAATGTCGTTCTGGTGCAAATTCTGAATCCTGCACGGAGCAATGGGAACGACGTCCTCGAAGCGAAAAGGGAAACTTACGAGATAACCAAAAGGATTAACAAGGTTTTCGGTTTTCGGGGATACGAACCTGTGATCTTGATTGATCATCCTATTCCTTTCCATGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATACGAGTACATTGTTTGTCGACAGGGAACTTCTCAAATCGACCAAGTTTTGGATGTCTCCCCGGATTCACCTCATACCAGCACGATTGTCGTGTCGGAATTCATAGGTTGTTCGCCATCTCTAAGTGGTGCGGTTAGAGTAAACCCTTGGGATTTTGATGCTGTAGCTGAGGCACTTTACGAGGCTGTCGCAATGCCTGCTTTAGAGAAGCAACTAAGGCACGAAAAACATTACCGATACATTAGCTCTCATGACGTTGCTTACTGGGCTCGCAGTTTCTCGCAAGATTTAGAGCGAGCATGTCAAGATCACTACAGTAAACGATGCTGGGGAATCGGACTCGGTTTAGGATTCAGAATTCTGTCACTTTCACCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATCGGAGCGCTTTTAGGAGGGCGATATTTTTGGACTACGACGGGACTGTCGTTTCCCAAGCTTCGTTGGTCAAATCCCCGACACCCGAAGTCATTTCTATACTCAACGACCTTTGCAAGGATTCAAACAACACTGTGTTTATAGTTAGTGGCAGGGGGAAAGATACTCTTGGTTCGTGGTTCGATTCGTGTAAGAATCTCGGTCTTGCCGCTGAACATGGATACTATTTGAGGTGGAATAGGGACTCTGAATGGGAAGTTAGTACATTAGCTGAAAACTTTGGTTGGAAAAGGATTGCAGAACCTGTGATGAAATTATACACCGAGGCCACCGATGGCTCGTCCATAGAGCCCAAGGACAGTGCCTTAGTATGGCATCATCGAGACGCCGATCCATGTTTCGGTTCATGTCAGGCCATGGAGCTCTTAGATCACCTTGAAAATGTTCTTGCTAACGAACCCGTAGTCGTCAAAAGAGGCCACCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACTATGATCGCCTCTGATAAGGCGCCCGACTTTGTGATGTGCATCGGAGACGATCGATCCGATGAAGACATGTTCGAAAGCATATCATGTACAACCTATAGCTCATCCCTTGCTGTTCCTCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCACCGACGTTTTGACCGTACTTCAAAGCCTGGCCACCTCTACTAGCGGTAAACTGAGGTCAGGTTTCGAAGCTCGTGTTTTGTTCGAGGATGATGTTTGA 2538 44.09 MLSSSCLSLLELSSVDMLDFPPTPRNVPRAMTASGIVSDKCRGRTIIVANLLPVHAKKDPDSGRWNFSFDDDSLLLQLKDGFSSDVDVVYVGSLKVDVNVQEQEEISQKLLEEFNCVPTFVPTSLQKQFYHGFCKQNLWPLFHYMMPISSYHGSRFDRPLWLAYLSANKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIFRTLPVRDEILKALLNTDLIGFHTFSYAHHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLEFALNHSHTSIKAKEIKEDFKGKKVILGVDDMDIFKGIGLKLLAMEKLLNQHPELRGNVVLVQILNPARSNGNDVLEAKRETYEITKRINKVFGFRGYEPVILIDHPIPFHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSQIDQVLDVSPDSPHTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVAEALYEAVAMPALEKQLRHEKHYRYISSHDVAYWARSFSQDLERACQDHYSKRCWGIGLGLGFRILSLSPSFRKLSIEHIGSAYRSAFRRAIFLDYDGTVVSQASLVKSPTPEVISILNDLCKDSNNTVFIVSGRGKDTLGSWFDSCKNLGLAAEHGYYLRWNRDSEWEVSTLAENFGWKRIAEPVMKLYTEATDGSSIEPKDSALVWHHRDADPCFGSCQAMELLDHLENVLANEPVVVKRGHQIVEVKPQGVTKGLVAERVLSTMIASDKAPDFVMCIGDDRSDEDMFESISCTTYSSSLAVPPKIFACTVGQKPSKAKYYLDDTTDVLTVLQSLATSTSGKLRSGFEARVLFEDDV 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12122590 12126661 - Cp4.1LG04g15490.1 Cpe04g01547 469109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01547 845 TIGRFAM T6PP: trehalose-phosphatase 575 824 IPR003337 GO:0003824|GO:0005992
Cpe04g01547 845 Gene3D - 702 834 IPR023214 -
Cpe04g01547 845 Gene3D - 575 682 IPR023214 -
Cpe04g01547 845 CDD GT20_TPS 44 529 IPR001830 GO:0003824|GO:0005992
Cpe04g01547 845 SUPERFAMILY HAD-like 576 824 IPR036412 -
Cpe04g01547 845 CDD HAD_TPP 577 816 - -
Cpe04g01547 845 Gene3D Glycogen Phosphorylase B; 37 297 - -
Cpe04g01547 845 Gene3D Glycogen Phosphorylase B; 298 513 - -
Cpe04g01547 845 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 831 - -
Cpe04g01547 845 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 44 533 - -
Cpe04g01547 845 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 577 779 IPR006379 -
Cpe04g01547 845 Pfam Glycosyltransferase family 20 44 529 IPR001830 GO:0003824|GO:0005992
Cpe04g01547 845 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 831 IPR001830 GO:0003824|GO:0005992
Cpe04g01547 845 Pfam Trehalose-phosphatase 579 813 IPR003337 GO:0003824|GO:0005992
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01547 Cpe18g00836 CCT
Cpe04g01547 Cpe18g00836 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01518 Cpe-Chr1:9083985 Cpe04g01547 Cpe-Chr4:12122590 0 dispersed
Cpe04g01547 Cpe-Chr4:12122590 Cpe19g01083 Cpe-Chr19:7365597 0 dispersed
Cpe18g00836 Cpe-Chr18:7720004 Cpe04g01547 Cpe-Chr4:12122590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01547 K16055 - csv:101209676 1513.05