Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01548 ATGAATATAGTTTCAAGGTTGCATGGAATAGGGAGAAGATTCAGCTCATCTGCTTTGGCGGAGGAGGAACTTGTTACTCCTCCTGTTCAGATAAGGAAAACGTTTCCGACCTACGATCCTCGCACCGGGGAAGTGATTGCTCATGTTGCCGAGGGCGAGGCGGAGGATATCAACCGGGCAGTATCGGCAGCTCGCAAGGCTTTCGACGAGGGGAAATGGCCGAAAATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTCGCTGATTTGGTTGAGAAGCATAGCGCTGAGCTTGCAGCATTGGAGACATGGAACAATGGCAAACCTTATGAACAATCGGCTCGGACCGAAATACCTATATTCGTGCGCTTGTTTCACTATTACGCCGGGTGGGCGGACAAAATCCATGGCTTGACCGTTCCAGCTGATGGGAAATATCATGTGCAAGTATTACATGAACCAATTGGAGTTGCAGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCATTGTCCTAAAAACTGCAGAGCAAACGCCTCTGACCGCTCTTTATGTCGCGAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGAGTTCTGAATGTCGTTTCGGGCTATGGTCCAACCGCGGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCCTTTACAGGATCGACGAACACGGGAAAAGTTGTGCTCGAATTGGCATCTAAAAGCAATTTGAAACCGGTAACGCTCGAACTTGGAGGGAAATCGCCTTTCATCGTTTGTGAGGATGCAGATGTTGATAAGGCCGTAGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCTCGTACTTTCGTGCATGAGCGTATATACGACGAGTTTGTCGAGAAGTCGAGGGCACGTGCCCAAAGACGTGTGGTTGGTGATCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATCGACTCGGAGCAGTTTGCAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGGGGTGACAGACTTGGGTCCAAGGGATACTTCGTCCAGCCGACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCGAAGGACGAAATCTTTGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGACGAAGTTATTCAAAGGGCAAACGCAACTCGTTACGGTCTAGCTGCTGGAGTTTTCACTACAAACCTCGACACAGCCAACACCATAACACGAGGATTGAGAACAGGGACGGTGTGGGTGAATTGCTTCGACGTATTTGACGCTGCAATACCGTTTGGTGGGTATAAGATGAGCGGAATGGGGAGGGAGAAAGGAATTTACAGCCTCCAAAACTACTTGCAGGTGAAGGCTGTAGTTACTCCTCTGAAGAATCCAGCATGTTCGGGCAAGAAGAGTTTTCAGTGGCCTATACAGAAGGCTTGA 1533 47.95 MNIVSRLHGIGRRFSSSALAEEELVTPPVQIRKTFPTYDPRTGEVIAHVAEGEAEDINRAVSAARKAFDEGKWPKMTAYERSRILLRFADLVEKHSAELAALETWNNGKPYEQSARTEIPIFVRLFHYYAGWADKIHGLTVPADGKYHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTNTGKVVLELASKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFAKVLRYIKSGIESDATLECGGDRLGSKGYFVQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANATRYGLAAGVFTTNLDTANTITRGLRTGTVWVNCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPACSGKKSFQWPIQKA 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12131591 12137677 + Cp4.1LG04g15470.1 Cpe04g01548 469110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01548 510 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Cpe04g01548 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 270 459 IPR016163 GO:0016620
Cpe04g01548 510 CDD ALDH_F2BC 33 490 - -
Cpe04g01548 510 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 32 496 - -
Cpe04g01548 510 SUPERFAMILY ALDH-like 33 491 IPR016161 GO:0016491
Cpe04g01548 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 33 488 IPR016162 GO:0016491
Cpe04g01548 510 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 32 496 - -
Cpe04g01548 510 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 264 271 IPR029510 GO:0016491
Cpe04g01548 510 Pfam Aldehyde dehydrogenase family 33 488 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01548 Cpe-Chr4:12131591 Cpe11g00003 Cpe-Chr11:14515 0 dispersed
Cpe17g00066 Cpe-Chr17:391085 Cpe04g01548 Cpe-Chr4:12131591 1.42E-40 dispersed
Cpe04g01548 Cpe-Chr4:12131591 Cpe07g00001 Cpe-Chr7:393 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01548 K00128 - csv:101209430 909.057