Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01549 ATGAAGGACAACAATGATGGGTTTGTGCGAGCGGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTTGAGAGGCATCTCAACAGAGCCTTGACGATGGAGAAGAACAAAAAGAAAGATGAAGATGGTAACAGCTTTCTCACTTCCGCTGCCATGGCTCGCAGTAGGTCTACTAAAGTCGCTGCTAAGGAGCGGCTGGAGTGGGAGATCGATCCGTCCAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTTGTTTGCTACCGTCCTCTGAAGTTTTCTGTTGGCTTTTTTAATGCATTAGTCAAGATGCTGGATTGGGGAGAAGAGGGTCACAGGACAGAAGCTGAAATTTCTTCACTAAGGGCAGCTTTCAAACAGGAAGTTGCTGTTTGGCATAAACTCGAGCATCCCAATGTTACTAAGTTTATAGGAGCAACAATGGGCTCAGCGGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGTAACATATGTTGTGTTGTGGTGGAATATCTCGCTGGAGGTGCCCTAAAATCTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGTTGGCACTTGATCTTGCTAGAGGATTGAGTTACCTTCATTCACAGAAGATCGTTCACAGAGATGTAAAGACAGAAAACATGCTGCTGGACAAAACACGTACGGTTAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACCGGGGAGACTGGGACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGCAACCCATATAACAGGAAGTGTGACGTGTACAGTTTCGGTATCTGCCTTTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTGATGAAGCGATGCTGGGATGCAACCCCGGACAAGCGGCCCGAGATGGACGAAGTAGTTTCCATGTTGGAGGCCATTGACACATCCAAGGGTGGAGGTATGATCCCTGTTGATCAAACTCAAGGTTGTCTATGCTTTCGAAAATATAGAGGGCCTTAA 1188 47.05 MKDNNDGFVRADQIDLKSLDEQLERHLNRALTMEKNKKKDEDGNSFLTSAAMARSRSTKVAAKERLEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVVCYRPLKFSVGFFNALVKMLDWGEEGHRTEAEISSLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQTQGCLCFRKYRGP 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12135714 12139619 - Cp4.1LG04g15530.1 Cpe04g01549 469111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01549 395 PANTHER - 1 389 - -
Cpe04g01549 395 Gene3D Transferase(Phosphotransferase) domain 1 193 383 - -
Cpe04g01549 395 PRINTS Tyrosine kinase catalytic domain signature 189 202 IPR001245 GO:0004672|GO:0006468
Cpe04g01549 395 PRINTS Tyrosine kinase catalytic domain signature 227 245 IPR001245 GO:0004672|GO:0006468
Cpe04g01549 395 PRINTS Tyrosine kinase catalytic domain signature 293 315 IPR001245 GO:0004672|GO:0006468
Cpe04g01549 395 PRINTS Tyrosine kinase catalytic domain signature 337 359 IPR001245 GO:0004672|GO:0006468
Cpe04g01549 395 Pfam Protein tyrosine and serine/threonine kinase 77 366 IPR001245 GO:0004672|GO:0006468
Cpe04g01549 395 Coils Coil 16 36 - -
Cpe04g01549 395 CDD STKc_MAP3K-like 81 366 - -
Cpe04g01549 395 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 389 - -
Cpe04g01549 395 SMART serkin_6 75 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01549 395 Gene3D Phosphorylase Kinase; domain 1 64 175 - -
Cpe04g01549 395 SUPERFAMILY Protein kinase-like (PK-like) 60 366 IPR011009 -
Cpe04g01549 395 ProSiteProfiles Protein kinase domain profile. 75 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01549 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01549 Cpe18g00839 CCT
Cpe04g01549 Cpe18g00839 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00561 Cpe-Chr3:3329868 Cpe04g01549 Cpe-Chr4:12135714 3.87E-48 dispersed
Cpe04g01549 Cpe-Chr4:12135714 Cpe08g00274 Cpe-Chr8:1762011 0 dispersed
Cpe18g00839 Cpe-Chr18:7743553 Cpe04g01549 Cpe-Chr4:12135714 0 wgd
Cpe20g00236 Cpe-Chr20:1347646 Cpe04g01549 Cpe-Chr4:12135714 2.86E-64 wgd
Cpe04g00554 Cpe-Chr4:5962969 Cpe04g01549 Cpe-Chr4:12135714 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62380 PF07714 PK_Tyr_Ser-Thr 6.10E-61 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01549 - - csv:101209182 737.258