Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01556 TACAGGCCCGCCATGCATTACTTTTTTCTGGAGAGGTTCTTACAACCAGCTGATTGGTTTGAGAAGAGGCTTGCTTACACTCGAAGTGTGGCTGCTAGTTCAATGGTTGGTTATATTGTTGGCTTAGGAGATCGACATTCCATGAACATTTTGATTGATCAAGTTACGGCTGAAGTTGTTCATATTGATCTGGGAGTTGCCTTTGAACAAGGCTTGATGCTTAAGACACCGGAAAGGGTTCCATTCAGGCTTACAAGAGATGTGATTGATGGTATGGGTGTTAATGGAGTGGAAGGGGTTTTCAGAAGATGTTGTGAGGAAACTCTCTCCGTTATGCGGACCAATAAAGAGGCACTGCTAACCATCGTTGAAGTTTTCATCCATGATCCGCTGTATAAATGGGCTTTATCCCCTCTGAAGGCATTGCAGCGTCAAAAGGAAACTGATGATGACCTGGAGACTAGTCTAGAAGGCTCAGAAGATGAATACGAAGGGAATAAAGATGCTGCACGTGCATTGTTGCGAGTCAAACAAAAACTAGATGGATATGAAGATGGCGAAATGAGAAGTGTGCATGGGCAGGTCCAACAGCTTATACAGGATGCTATCGACCCCGATCGTTTGTGCCACATGTTTCCAGGCTGGGGAGCATGGTTGTGA 660 45.0 YRPAMHYFFLERFLQPADWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQVTAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDVIDGMGVNGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLETSLEGSEDEYEGNKDAARALLRVKQKLDGYEDGEMRSVHGQVQQLIQDAIDPDRLCHMFPGWGAWL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12177814 12180372 - Cp4.1LG04g15580.1 Cpe04g01556 469118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01556 219 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 29 49 IPR018936 GO:0016301
Cpe04g01556 219 Coils Coil 142 162 - -
Cpe04g01556 219 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1 219 - -
Cpe04g01556 219 SMART pi3k_hr1_6 2 183 IPR000403 -
Cpe04g01556 219 Gene3D - 2 180 IPR036940 GO:0016301
Cpe04g01556 219 Pfam FATC domain 190 219 IPR003152 GO:0005515
Cpe04g01556 219 SMART FATC_2 187 219 IPR003152 GO:0005515
Cpe04g01556 219 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 1 174 IPR000403 -
Cpe04g01556 219 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1 219 IPR038980 GO:0004674|GO:0006974
Cpe04g01556 219 ProSiteProfiles FATC domain profile. 187 219 IPR003152 GO:0005515
Cpe04g01556 219 SUPERFAMILY Protein kinase-like (PK-like) 3 146 IPR011009 -
Cpe04g01556 219 Pfam Phosphatidylinositol 3- and 4-kinase 5 135 IPR000403 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01556 K04728 ATM, TEL1; serine-protein kinase ATM [EC:2.7.11.1] - csv:101208785 439.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01556 Cpe-Chr4:12177814 Cpe15g00427 Cpe-Chr15:5394635 1.47E-36 dispersed
Cpe04g01556 Cpe-Chr4:12177814 Cpe19g00858 Cpe-Chr19:6322146 1.51E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g743 . . . . . . . . . . . . . . Sed12g2440 . Cpe04g01556 Bhi02g00449 Tan09g2251 Cmetu02g0993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01554 . . Cme02g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01556 Cpe_Chr04 FPKM 3.448165 3.975451 24.884516 21.910326 15.214471 12.056541 14.175686 0.930844 1.545105 1.190128