Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01564 | ATGGCGGATCTTTACGGACTCCATCCTCTCGCGGACTACTCCTACGAGTCCTCTTCAGCGGCTCCGTTGGACAACCTCCTCGTTCCGGTTAATTATCAGGCCTATTCTACTGCTTCTTCAGATTATTCTCATCCGCTTCAGGTTTTTGGATCGGGACACGTACCGTCGGTGTCGTCGGGGGACTACGATGCCGCTTTAGTGGCGGTTGTTTCCGAGGAGGAGTCTGCGGGTGCAATTAGAGAGAAAATTGCTTCTCATCCTCTTTACCCTAGACTTGTCGATGCGTTTGTTGACTGCCAAAAGATCGGTGCACCGCCGGAGGTCGCTAATATCCTAGGCAGAAGCGTTCGAGGAAGTGATATCGGCGAAAGAACTTCCAGCGTTTCAACTCGCTTGGGTGCCGATCCCGAGCTCGATGAGTTCATGGAAACATACTGCGGGATACTGGCGAAGTACAAGCTGGATCTCTCCCTGCCCTTTGTTGAAGCATCTTCCTTCCTCAACAACATGGAAACGCAGTTAAACAGGCTATGTAACGGCACCACCAGAGGCTACGTTTCCGGAGTCATGATAGATTGGTGTTTCCCGTTTATGATATCAGATGAAGCTGCTGCTGGTTCATCAGAAGAGGATGTAAGTGCCGGAGAAGTAGAATTGCAGGACTCTCTGTGGGCGAATGAAGATCGTGAGCTGAAGGATCGACTCCTACGCAAGTATGGTGGTTATCTTAGTAGCTTAAAGCAAGAATTTTCAAAAACTAAAAAGAAGGTAAAACTACCAAAAGAATCCAGACAGATCCTGCTTGACTGGTGGAACGTCCATTGCAAATGGCCTTACCCCACTGAGATGGACAAAATTGAGTTGGCGGAGTCGACAGGGCTTGACCCTAAACAAATTAACAACTGGTTCATAAACCAGAGAAAACGGCATTGGAAAGCATCAGAGAATATGCAATTTGGTGATGTGCATGGGGTGTTTACGGCGGACCCCTTGTGA | 996 | 48.59 | MADLYGLHPLADYSYESSSAAPLDNLLVPVNYQAYSTASSDYSHPLQVFGSGHVPSVSSGDYDAALVAVVSEEESAGAIREKIASHPLYPRLVDAFVDCQKIGAPPEVANILGRSVRGSDIGERTSSVSTRLGADPELDEFMETYCGILAKYKLDLSLPFVEASSFLNNMETQLNRLCNGTTRGYVSGVMIDWCFPFMISDEAAAGSSEEDVSAGEVELQDSLWANEDRELKDRLLRKYGGYLSSLKQEFSKTKKKVKLPKESRQILLDWWNVHCKWPYPTEMDKIELAESTGLDPKQINNWFINQRKRHWKASENMQFGDVHGVFTADPL | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12250525 | 12255224 | + | Cp4.1LG04g15560.1 | Cpe04g01564 | 469126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01564 | 331 | SUPERFAMILY | Homeodomain-like | 252 | 322 | IPR009057 | - | |
Cpe04g01564 | 331 | Pfam | Homeobox KN domain | 270 | 309 | IPR008422 | GO:0003677|GO:0006355 | |
Cpe04g01564 | 331 | Gene3D | - | 247 | 320 | - | - | |
Cpe04g01564 | 331 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 | 1 | 324 | - | - | |
Cpe04g01564 | 331 | ProSiteProfiles | ELK domain profile. | 230 | 250 | IPR005539 | GO:0003677 | |
Cpe04g01564 | 331 | Pfam | KNOX1 domain | 78 | 113 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe04g01564 | 331 | SMART | KNOX1_2 | 77 | 121 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe04g01564 | 331 | Pfam | ELK domain | 230 | 251 | IPR005539 | GO:0003677 | |
Cpe04g01564 | 331 | ProSiteProfiles | 'Homeobox' domain profile. | 250 | 313 | IPR001356 | GO:0003677 | |
Cpe04g01564 | 331 | SMART | KNOX2_2 | 128 | 179 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe04g01564 | 331 | CDD | homeodomain | 262 | 312 | IPR001356 | GO:0003677 | |
Cpe04g01564 | 331 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 324 | - | - | |
Cpe04g01564 | 331 | SMART | HOX_1 | 252 | 317 | IPR001356 | GO:0003677 | |
Cpe04g01564 | 331 | Pfam | KNOX2 domain | 132 | 178 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe04g01564 | 331 | ProSitePatterns | 'Homeobox' domain signature. | 288 | 311 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe04g01564 | 331 | SMART | ELK_2 | 230 | 251 | IPR005539 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01546 | Cpe-Chr1:9228197 | Cpe04g01564 | Cpe-Chr4:12250525 | 9.50E-48 | dispersed | |
Cpe04g01564 | Cpe-Chr4:12250525 | Cpe11g00023 | Cpe-Chr11:125984 | 3.43E-89 | dispersed | |
Cpe04g01564 | Cpe-Chr4:12250525 | Cpe09g00513 | Cpe-Chr9:3419266 | 1.55E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49451 | PF03791 | KNOX2 | 2.70E-20 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01564 | - | - | bhj:120070843 | 392.504 |