Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01564 ATGGCGGATCTTTACGGACTCCATCCTCTCGCGGACTACTCCTACGAGTCCTCTTCAGCGGCTCCGTTGGACAACCTCCTCGTTCCGGTTAATTATCAGGCCTATTCTACTGCTTCTTCAGATTATTCTCATCCGCTTCAGGTTTTTGGATCGGGACACGTACCGTCGGTGTCGTCGGGGGACTACGATGCCGCTTTAGTGGCGGTTGTTTCCGAGGAGGAGTCTGCGGGTGCAATTAGAGAGAAAATTGCTTCTCATCCTCTTTACCCTAGACTTGTCGATGCGTTTGTTGACTGCCAAAAGATCGGTGCACCGCCGGAGGTCGCTAATATCCTAGGCAGAAGCGTTCGAGGAAGTGATATCGGCGAAAGAACTTCCAGCGTTTCAACTCGCTTGGGTGCCGATCCCGAGCTCGATGAGTTCATGGAAACATACTGCGGGATACTGGCGAAGTACAAGCTGGATCTCTCCCTGCCCTTTGTTGAAGCATCTTCCTTCCTCAACAACATGGAAACGCAGTTAAACAGGCTATGTAACGGCACCACCAGAGGCTACGTTTCCGGAGTCATGATAGATTGGTGTTTCCCGTTTATGATATCAGATGAAGCTGCTGCTGGTTCATCAGAAGAGGATGTAAGTGCCGGAGAAGTAGAATTGCAGGACTCTCTGTGGGCGAATGAAGATCGTGAGCTGAAGGATCGACTCCTACGCAAGTATGGTGGTTATCTTAGTAGCTTAAAGCAAGAATTTTCAAAAACTAAAAAGAAGGTAAAACTACCAAAAGAATCCAGACAGATCCTGCTTGACTGGTGGAACGTCCATTGCAAATGGCCTTACCCCACTGAGATGGACAAAATTGAGTTGGCGGAGTCGACAGGGCTTGACCCTAAACAAATTAACAACTGGTTCATAAACCAGAGAAAACGGCATTGGAAAGCATCAGAGAATATGCAATTTGGTGATGTGCATGGGGTGTTTACGGCGGACCCCTTGTGA 996 48.59 MADLYGLHPLADYSYESSSAAPLDNLLVPVNYQAYSTASSDYSHPLQVFGSGHVPSVSSGDYDAALVAVVSEEESAGAIREKIASHPLYPRLVDAFVDCQKIGAPPEVANILGRSVRGSDIGERTSSVSTRLGADPELDEFMETYCGILAKYKLDLSLPFVEASSFLNNMETQLNRLCNGTTRGYVSGVMIDWCFPFMISDEAAAGSSEEDVSAGEVELQDSLWANEDRELKDRLLRKYGGYLSSLKQEFSKTKKKVKLPKESRQILLDWWNVHCKWPYPTEMDKIELAESTGLDPKQINNWFINQRKRHWKASENMQFGDVHGVFTADPL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12250525 12255224 + Cp4.1LG04g15560.1 Cpe04g01564 469126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01564 331 SUPERFAMILY Homeodomain-like 252 322 IPR009057 -
Cpe04g01564 331 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677|GO:0006355
Cpe04g01564 331 Gene3D - 247 320 - -
Cpe04g01564 331 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 324 - -
Cpe04g01564 331 ProSiteProfiles ELK domain profile. 230 250 IPR005539 GO:0003677
Cpe04g01564 331 Pfam KNOX1 domain 78 113 IPR005540 GO:0003677|GO:0005634
Cpe04g01564 331 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Cpe04g01564 331 Pfam ELK domain 230 251 IPR005539 GO:0003677
Cpe04g01564 331 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677
Cpe04g01564 331 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Cpe04g01564 331 CDD homeodomain 262 312 IPR001356 GO:0003677
Cpe04g01564 331 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 324 - -
Cpe04g01564 331 SMART HOX_1 252 317 IPR001356 GO:0003677
Cpe04g01564 331 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Cpe04g01564 331 ProSitePatterns 'Homeobox' domain signature. 288 311 IPR017970 GO:0000981|GO:0006355
Cpe04g01564 331 SMART ELK_2 230 251 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01546 Cpe-Chr1:9228197 Cpe04g01564 Cpe-Chr4:12250525 9.50E-48 dispersed
Cpe04g01564 Cpe-Chr4:12250525 Cpe11g00023 Cpe-Chr11:125984 3.43E-89 dispersed
Cpe04g01564 Cpe-Chr4:12250525 Cpe09g00513 Cpe-Chr9:3419266 1.55E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49451 PF03791 KNOX2 2.70E-20 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01564 - - bhj:120070843 392.504