Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01565 ATGACTGTAGACAATATCTTGTCCCACGCTTCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGCGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCTGCAATTGGATTCGATAAGAGTGGTGATAACCTTGCCATTGGCGATCGAGGTGGTCGTGTTATTATATTTGAAAGAAACGACAGGAAGGATACTTCGAAAAATATCCATACTCGGAATAAGTTGGAGCAGTTGAATCGTACTCCTGCATCTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATTGAAGAGAAGATTAATAAAGTAAAGTGGTGCGTATCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGACAAAACTATTAAACTATGGAAGGTTAAGGAGCACAAGGCGAAAACCATTAAAGAGATGAACCATGATCAATATGTGAGTTCAGAAAATGCACTTTTGGCAGAGATGAGTTTCTCTAGCGAACAAGGAAAATTCTCTCTTTCCAGTGGCTGCCATCGGGATCTTTCAGAGAATACGGCGATGAATAAGGTAGCGTCTAAAGACATTAATGACATGATTCCTGATCTAGACGATACTTCTTGGAGAAGATGCCGAAAGGTGTATGGTCATGCTCATGATTTTAATATTAACTCCATTTCTAACAATAGTGATGGCGAGACGTTTATTTCTGCTGATGACTTGCGAATAAACTTATGGAACCTCGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACGGAGATCATAACGTCGGCTGAATTCCATCCTCTGCACTGTAATCTTCTTGCGTACAGTAGCTCAAGGGGCTTTATTCGTTTAGTGGATATGCGCCAGTCTGCATTATGTGATCATNATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACGGAGATCATAACGTCGGCTGAATTCCATCCTCTGCACTGTAATCTTCTTGCGTACAGTAGCTCAAGGGGCTTTATTCGTTTAGTGGATATGCGCCAGTCTGCATTATGTGATCATAGTGCAATTCTATTACGAGCCCAAGAATTGAGTCGACCAAAATCATTTTTTACGGAGATCATTTCTTCCATTTCGGATATAAAATTTTCAAGTGATGGGCGGTTCATCATTAGTCGGGATTACATGAATTTAAAGCTTTGGGATATCCATAAGGGTTCTTCTCCAGTCGCAGTTTTCAAGGTTCATGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTAAGTCCAGACGGACTTCACTTTGCAACTGGATCTTATAGCAACCAATTACGGATGTTCTCTTATGGCTATGGAAGTGCGGAAGGGATCACTACTGAAGCGGGGAAAACTCCCGATAGGAAGCCAAATCTCCAAACCGCTAGGCGGGCTAGACGACGATCATCCTTAAGCAATTTGACACGTGATTTTTTTCGGCACGGCAATGAACATTCAAGCTCGGGAAGTAATGAAGCTTCTGTTGACCTGAACTCCAAGTTACTACATTTGGCGTGGCATCCAACAGAAAATTTAATCGCCTGTGCTACTGGAAGTGGCCTGTTCATGTATTATGCATAA 1689 41.21 MTVDNILSHASLEWKFSQVFGERVAGEDIQDVDIISAIGFDKSGDNLAIGDRGGRVIIFERNDRKDTSKNIHTRNKLEQLNRTPASHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKVKWCVSPNGSRFILSTNDKTIKLWKVKEHKAKTIKEMNHDQYVSSENALLAEMSFSSEQGKFSLSSGCHRDLSENTAMNKVASKDINDMIPDLDDTSWRRCRKVYGHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHXIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHSAILLRAQELSRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKGSSPVAVFKVHEHLRPRLCELYDNDSIFDRFECCLSPDGLHFATGSYSNQLRMFSYGYGSAEGITTEAGKTPDRKPNLQTARRARRRSSLSNLTRDFFRHGNEHSSSGSNEASVDLNSKLLHLAWHPTENLIACATGSGLFMYYA 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12255837 12261272 + Cp4.1LG04g15570.1 Cpe04g01565 469127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01565 562 Gene3D - 365 559 IPR015943 GO:0005515
Cpe04g01565 562 SUPERFAMILY WD40 repeat-like 32 472 IPR036322 GO:0005515
Cpe04g01565 562 Pfam WD domain, G-beta repeat 217 254 IPR001680 GO:0005515
Cpe04g01565 562 PANTHER OS02G0617600 PROTEIN 9 315 - -
Cpe04g01565 562 PANTHER OS02G0617600 PROTEIN 316 562 - -
Cpe04g01565 562 SMART WD40_4 320 357 IPR001680 GO:0005515
Cpe04g01565 562 SMART WD40_4 376 414 IPR001680 GO:0005515
Cpe04g01565 562 SMART WD40_4 25 60 IPR001680 GO:0005515
Cpe04g01565 562 SMART WD40_4 102 142 IPR001680 GO:0005515
Cpe04g01565 562 SMART WD40_4 214 254 IPR001680 GO:0005515
Cpe04g01565 562 SMART WD40_4 258 305 IPR001680 GO:0005515
Cpe04g01565 562 SMART WD40_4 524 562 IPR001680 GO:0005515
Cpe04g01565 562 SMART WD40_4 418 472 IPR001680 GO:0005515
Cpe04g01565 562 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 102 116 IPR018067 -
Cpe04g01565 562 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 9 315 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 316 562 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 MobiDBLite consensus disorder prediction 482 502 - -
Cpe04g01565 562 Gene3D - 75 364 IPR015943 GO:0005515
Cpe04g01565 562 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 254 281 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 118 146 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 226 253 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 282 310 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 531 560 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 PIRSF PPA2_B55 2 316 IPR000009 GO:0000159|GO:0019888
Cpe04g01565 562 PIRSF PPA2_B55 314 562 IPR000009 GO:0000159|GO:0019888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01565 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - csv:101206601 844.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01718 Cpe-Chr2:14068781 Cpe04g01565 Cpe-Chr4:12255837 0 dispersed
Cpe03g01075 Cpe-Chr3:8889073 Cpe04g01565 Cpe-Chr4:12255837 0 dispersed
Cpe04g01565 Cpe-Chr4:12255837 Cpe12g00630 Cpe-Chr12:6186691 0 dispersed
Cpe04g01565 Cpe-Chr4:12255837 Cpe17g00509 Cpe-Chr17:4273860 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01565 Cpe_Chr04 FPKM 2.625879 2.805282 3.256895 3.351442 2.726065 2.913924 3.138062 0.31765 0.974859 0.654836