Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01566 ATGACGTCAAGTATGTTGACTGGAGAACGGAGATGGACATCAACCAGACGAGGTGGGATGACTGTTTTAGGAAAGGTTGCAGTTCCAAAACCTATAAACTTACCGAGTCAAAGGTTAGAAAATCATGGTTTGGACCCAAATGTGGAAATTGTACCCAAGGGTACACTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCATGGGGTTCCTCATCAGTTTCTCCAAATACAGAAAGTGCTTCTAGTTCACCAAGCCATCTCTGTGGTCGCCCTTCATCTGCTGGTGGTGGCACTCGTCCATCAACTGCTGGTAGTGACAGGTCCCATGAACCTCATGGTAATGCGTGGGGCCCAAGTTCTAGACCGTCATCTGCCTCTGGGCCTGTGACATTAAATCACGCATCACTCGCATCCTTACGCCCTCAGAGTGCAGAAACTAAGTCTAGTAGTTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTACAGAGAAAGTGGGAACAATGCCATGTAAGAGTGATGGGTTTTCTTTGACATCTGGAGATTTTCCTACGCTGGGTTCAGAAAAAGAATGTGTAGGAAAGGGTGCCGAGTCACAAGATAATATGTCCAATGGAGGAGCAACAATGAAAGAGATGACTGGAACTTCGGCAATGGATGATCCTGAAAATGTAACTGCAAGTGTTTATACTTTGAGAAGTGATAATCTTCCACACAACGATGAGGGATCTAGGCCAAATGCAGAGAAATGGGTGGGGCATCCCCAACCTTACCCCGGTGCAAATATTCCTCCCCCACGTTATGATGGCTGGCATGGATCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGAGGTCCTCCACAAGGAGGTCCGCCGTATAGAACTCCAGTTGCTCCTGGTAATTTCCCTATGGATCCATTTCTGTATTATCCTCAGATTCCCCCTGGTGGCCTTCCAAATCCCCACGCTCCTCATGGAACTGGACCCAGGGGTCCCCATCCTAATACTGGAGATATATACAGACCTCCTATGCACGATGGTTTTATTCACCCAGGTGTGTCAATTAGGCCTGGATTTTACCCAGGTCCAGTTACCTATGAGGGGTATTACCGTCCTCCCATGGGCTACTGTAATTCGAATGATAGAGATGCTCCATTTATGGGAATGCCTGCTGGGCCTTCTGGACCTTCTGGGCCTGCTGGTCCTGCTGGTCCTGCTGTTTACAACAGGCACTTGGGCCTGGGCAAAAGTGCCTCTGAGCCTGCAAGTTCCCATGGCTTATCCAGTGGACATGGTTCTAGTGGAAAGGCTTTGGTTCCAGAACAAGTAGAATCTGATCTTCCTTGTGATAATCAAGGACCATACAAGGTTCTGATGCAGCAGGGAAACTTGAATGGTAAGAACGAAGAAGAAGAAAATAGGGTAAACCCAACAACTACTAATCAGTTGATTCTTGAGAAGGCTGACCAACAGAGGGCGTCTCCATGGGAGAATGACTGGGATCATAAAAAGGAAGTTGATGCGAGGAAAAGAACATTTGGGGTGGAACCATTTGCTCAGGCTTCTGCCAGCCATAAAGCTCAATCTTCTGAAAATATTGAAGGGAAGTCCTGTGGAAGCATGAGGACTGGTGATGGTTTACTAGAAAAATCAGATGCTGCTGCTTCTGGTTTCTCTGAAGTTTTGAAATCACTGGCTCCTGCCACAAAAGATTCAAGTCTGATTCAGAAGATAGAGGGACTAAATGCCAAAGCCCGGGCTTCTGATGTGCGACATGATGATGCACTTATTTCCAGCAGGGAGGAGTCAAATGAGCTTCAATCTAAAGATAAGCACTCTGATCATTTTTTTGCCCATGAAGCTGGTGTGAGTACTGTTCTTCCTCAAAATAGGGATTTTAATGAAGTCATAGACCCTGCCTCCTGTGAATTGAGCTTGTCCACTGGTGATAGGAACGTTAAATTATACAGTGGAGCACCCGTTCACAGGAGGTCTAACCGTGGAATGCAAGGGAGAAATGATCACCATGGTCGAGGAAAAGTCAATACGCAAGAGGTTGAAGGGTGGCATAAAAGACCCATATTGGACTCCCCAGGCATGATAGCTACTCCCCAGGAAAGTTCTGTTCTTGCGAGAGACCACAGCGCTTTAGGGGCTATTGATAAGGCGGAGTCATTTCCTTCTGATAGCCATGGAGATGTACCTGCCCCATCCGTAGGTGATTCAAAAGATAGTCAAGCTCAGCGTACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAAACAACTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAAGGCCAGGGCCTTGGCAAAACTTGAAGAGTTGAACAGGCGTACAGTAGCAGGGGAAGGGCCAACTCAGTGGTCTGAAAATGCATCTAATGATGCCATTAGAAATAAGATAGAAGAACCTCGAAATGTTGGTAACCCAAGAACGATTGATATGATATCTGGAGAGCATAACACAGTTTCTGATCTGCACGTGGTTGCTAACAATAGTGAGTCAACTATGGGCACTAACAAGAATTCTCCCATTGTATCAGAAAATACATCATCGAAGAATCAGAGTAGTGGCAATAAGGAAAAGGTTGTGGCACCTATTGAATCAAGACCTATTGAGCAGGATGCAGCTCAAAATAAGAACGTCTCTGAGGTAAATGGGGGCGGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAGAAACCAAATACTCCATCTGACAAGACTGAAAAGCTTCCCCATTTAGTTAAGGAATCGAAAAGTCAGACCGTTGTTGCTGACATTCATTCAGTTGTAGAGGAGTCGAGCAATGTTACTACAGATCCTGTTGCTGAATCTTCGACACCTACAAGAAAGAAACATAACAAGAGTGGGAAGAACAAGCACAAAGTGGAAGAGGCCTCAATATCTACATCATTACCCCAAGTTTCAAAAGAAGCAACTCCTACAACGGAATATGATAAACAAACGGCTTCCCAATCAGTAATGAATCCACCTTCAGATCCACAACTGCCCATTAATAGAGATGATAATCAGTTCAATTTGCAGCAACCTCTGTTGCCAGTTGTAGAGACACATGGCAAAGGTAATGGTCAGTGGAAGTCTCAGCATTCTCGCAGGATGCCGAGAAATGCACAAAATAAACCAGGAGAAAAAATCCACGGCGGTGATTCTGTTGTCTGGGCCCCAGTGCGATCTCTCAACAAATGTGAAGTTTCCATTGAAGCTGTTCAGAAGAATGAAGCTGAGGCTGTTGCTTCATCTGTAAAGATTGATAACCAAGTGCAGAATATACCAAAAAATAAGAGAGCTGAAAGGGAGATATACGTACCGAAGCCAGTAGCCAAAGAAATGGCACAGCAAGGAACCTTCCATCAAGATTTTTCGCCCATGAACCAGGCACCAGATGATAATAAGGCAGATTCGAGTTCTCAAAGCTCTGATAATACTCGATCCAGTGTTGCTGCTTCAGGTATGGGATTTTCCACAGACCACAGAAATGGGGATGGTAGGCACCATAAACAAAGCAAGGCACACGCCTCATGGCGGCAACGGGGAGGAGCAACCGAATATGGGCAGGGTTTACAAGATCAATCATCTTATGCTTCAAATGCTGGTAGTTATGTTAAAAAATCAAGTGAGTATCAAGTACCTGAGAAGCCTGCTGGAAACTCCACCAATGAGTTCGTGAGTCAGATTGATGAGTGGGATCCACCTGAAGGGTGGAATGATCCCAACTACTCCGCCTCTACCCCACCTGTCACTGCTGTCCTTGGAAGAGACCAGGGAGTGACTGGCAGGGGAAAACGATCCCAATTTAAGGGTCACAAGGGTATTGGGAACAATTATGATCTAAATGAAAGGAAACTTAGAAGTGGAGACCACGAAAAAATTTCCTCTGAATCTTCGATGCCTGAAGTGGATCAAAAGGATGCATCAGCTGCTGCTAAAGAAAGTCGGGGTGTCGGGGAACGTTCAACATCTCATTGGCAACCCAAATCACGGATGGTTCAACCCCACAATCATCAAGGTAGCAAGGCTAGAGGTGATCAAAATGTTGATGCTGATGCTGCGCAAACTAATAAAACGGGATCTAGTCTATCTTCACATGGCACAAAGACGAGTGATGGTGTGACCCAAAATCATGAAGAGGGAGCAAGTGTTGGGCATCATGGGTTCGGGGGAGATAAGAAAATTTCTTCCCGTAAAGACCGTCCATACTCCCCAACCCAAGGTCCAATCCATAATGAAGAGGTTGCTCCAGCAAATTCAGATGTGAGACGCCAGCAACAGTTGCCTTCATTTTACCATAAAGGTAATGAGATCAATAACCGATTTGGAAGAGGGTCGGAGTCTCGTCGGGAAAGGAATTTGTTTCAATATCATAAGCAGCAGCAGAATTTTCCACCTGCTAATAGGGACAGGCAAAGACAAAATTTGCAGTACGAGTACCAGCCAGTTGGGCCACACAATGGAAAACCAAACATGGATAGACCTAAGGATAATACCACTCAGCATTCAGGATCAAGGTACATAGAGAGGGGCCAAGGCCAATCCAGAAGAGATGGTGGGAACTTTTACAAGCAGGAAGGTGGAGGACCAGTTTGA 4680 45.56 MTSSMLTGERRWTSTRRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSSSVSPNTESASSSPSHLCGRPSSAGGGTRPSTAGSDRSHEPHGNAWGPSSRPSSASGPVTLNHASLASLRPQSAETKSSSSQLSRFAETSENPVAWNSAVTTEKVGTMPCKSDGFSLTSGDFPTLGSEKECVGKGAESQDNMSNGGATMKEMTGTSAMDDPENVTASVYTLRSDNLPHNDEGSRPNAEKWVGHPQPYPGANIPPPRYDGWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPMDPFLYYPQIPPGGLPNPHAPHGTGPRGPHPNTGDIYRPPMHDGFIHPGVSIRPGFYPGPVTYEGYYRPPMGYCNSNDRDAPFMGMPAGPSGPSGPAGPAGPAVYNRHLGLGKSASEPASSHGLSSGHGSSGKALVPEQVESDLPCDNQGPYKVLMQQGNLNGKNEEEENRVNPTTTNQLILEKADQQRASPWENDWDHKKEVDARKRTFGVEPFAQASASHKAQSSENIEGKSCGSMRTGDGLLEKSDAAASGFSEVLKSLAPATKDSSLIQKIEGLNAKARASDVRHDDALISSREESNELQSKDKHSDHFFAHEAGVSTVLPQNRDFNEVIDPASCELSLSTGDRNVKLYSGAPVHRRSNRGMQGRNDHHGRGKVNTQEVEGWHKRPILDSPGMIATPQESSVLARDHSALGAIDKAESFPSDSHGDVPAPSVGDSKDSQAQRTKMRELAKQRTKQLQEEEEERTRKQKARALAKLEELNRRTVAGEGPTQWSENASNDAIRNKIEEPRNVGNPRTIDMISGEHNTVSDLHVVANNSESTMGTNKNSPIVSENTSSKNQSSGNKEKVVAPIESRPIEQDAAQNKNVSEVNGGGASLKHKRTGNKQKPNTPSDKTEKLPHLVKESKSQTVVADIHSVVEESSNVTTDPVAESSTPTRKKHNKSGKNKHKVEEASISTSLPQVSKEATPTTEYDKQTASQSVMNPPSDPQLPINRDDNQFNLQQPLLPVVETHGKGNGQWKSQHSRRMPRNAQNKPGEKIHGGDSVVWAPVRSLNKCEVSIEAVQKNEAEAVASSVKIDNQVQNIPKNKRAEREIYVPKPVAKEMAQQGTFHQDFSPMNQAPDDNKADSSSQSSDNTRSSVAASGMGFSTDHRNGDGRHHKQSKAHASWRQRGGATEYGQGLQDQSSYASNAGSYVKKSSEYQVPEKPAGNSTNEFVSQIDEWDPPEGWNDPNYSASTPPVTAVLGRDQGVTGRGKRSQFKGHKGIGNNYDLNERKLRSGDHEKISSESSMPEVDQKDASAAAKESRGVGERSTSHWQPKSRMVQPHNHQGSKARGDQNVDADAAQTNKTGSSLSSHGTKTSDGVTQNHEEGASVGHHGFGGDKKISSRKDRPYSPTQGPIHNEEVAPANSDVRRQQQLPSFYHKGNEINNRFGRGSESRRERNLFQYHKQQQNFPPANRDRQRQNLQYEYQPVGPHNGKPNMDRPKDNTTQHSGSRYIERGQGQSRRDGGNFYKQEGGGPV 1559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12261430 12272580 - Cp4.1LG04g15600.1 Cpe04g01566 469128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1485 1509 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1413 1428 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 855 1080 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 924 941 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 535 550 - -
Cpe04g01566 1559 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1553 IPR038808 -
Cpe04g01566 1559 Coils Coil 762 801 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 680 705 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1447 1462 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1126 1559 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 759 801 - -
Cpe04g01566 1559 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1553 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1349 1406 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 991 1043 - -
Cpe04g01566 1559 Pfam BAT2 N-terminus 12 137 IPR009738 -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 675 714 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 200 233 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 855 885 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1146 1184 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 54 172 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 400 450 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 736 834 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1242 1256 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 330 351 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 119 172 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1215 1235 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 56 110 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1305 1328 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 947 970 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 1053 1067 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 532 551 - -
Cpe04g01566 1559 MobiDBLite consensus disorder prediction 209 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01566 - - - mcha:111007408 2395.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01566 Cpe18g00849 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00849 Cpe-Chr18:7825274 Cpe04g01566 Cpe-Chr4:12261430 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01566 Cpe_Chr04 FPKM 3.38803 3.474041 11.60346 12.065851 15.9969 15.237363 16.461773 1.35876 1.169596 1.237326