Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01568 ATGGCAGACCCAACAGGTTCATTAGCTTCAGATAAGGCTCATGCATCCTCTCATTCTTCATCGGACCATTTTAGTTACTCTACAATTATTTTTATAACTTATGTTATAGATTGGTTGGAGAAGATTTCTGCAAAAACTGTATTGAATTTAGTTGTTGATGAGGCTATCAATGATGATAACTCTGTGGTTTCTTTGCATCCTGCTACCATGGAAAAGCTGCAGTTCTTTAGAGGAGATACTATTTTATTGAAGGGGAAGAAGCGGAGAGATACAGTGTGCGTTGTTCTTTCCGATGAGCAATGTGAAGAGCCAAAAATCAGAATGAATAAAATTGTACGAGCCAATCTCAGAGTTCGTCTTGGAGATGTTGTATCTGTCCATCAGTGTCCAGATGTGAAGTATGGAAAGCGGGTTCACATCCTCCCTGTTGATGATACAATCGAGGGTGTTACTGGCAACCTATTTGATGCATATTTGAAACCTTATTTCTCGGAAGCATATCGACCCGTTAGGAAGGGTGACCTGTTCTTAGTCAGGGGTGGAATGAGAAGTGTTGAGTTCAAGGTCATAGAGACAGACCCTGGTGAATACTGCGTTGTTGCACCTGATACCGAGATCTTCTGTGAGGGAGAGCCCATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTCGGATATGATGATGTTGGAGGAGTTAGGAAGCAAATGGCTCAGATCCGTGAACTAGTGGAATTACCACTTAGACATCCGCAACTTTTCAAATCGATTGGCGTAAAGCCTCCGAAAGGGATATTGCTATATGGGCCTCCTGGATCTGGAAAAACTCTTATAGCCAGAGCTGTTGCTAATGAGACGGGTGCATTTTTCTTTCTGATTAATGGTCCAGAAATAATGTCTAAGTTAGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCGTTTGAGGAAGCTGAAAAGAATGCCCCTTCAATTATATTTATTGATGAACTGGATTCCATTGCTCCAAAGAGGGAGAAAACACATGGAGAAGTGGAAAGGCGTATCGTATCCCAACTTCTTACCTTGATGGATGGCCTCAAAACTAGAGCACATGTTATTGTTATTGGAGCAACGAACAGACCCAACAGCATTGACCCTGCTCTGAGGAGATTCGGAAGATTTGATCGAGAGATTGATATTGGTGTTCCTGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAGAACATGAAACTTGCCGAGGATGTGGATCTTGAAAGAGTTGCACGGGATACTCATGGTTATGTCGGTGCTGATCTCGCCGCTCTTTGTACTGAAGCAGCACTCCAGTGTATTCGCGAGAAAATGGATGTCATTGACTTGGAAGATGAAACAATTGATGCTGAGGTCGTGGAGGTTCCGAATGTTTCGTGGGATGATATCGGTGGGTTAGAAAATGTTAAAAGAGAGCTGCAGGAGACTGTCCAATATCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTTGGCATGTCACCATCTAAAGGTGTCCTCTTTTATGGGCCCCCGGGCTGTGGTAAGACGCTGCTGGCTAAGGCAATTGCCAATGAATGTCAGGCCAACTTTATAAGTGTGAAAGGACCTGAGTTGCTGACAATGTGGTTCGGTGAAAGTGAGGCAAATGTGAGAGAGATATTTGACAAGGCTCGTCAGTCGGCTCCTTGTGTACTATTTTTCGATGAACTCGATTCTATCGCAACTCAGCGTGGCAGTTCTGTTGGAGATGCTGGTGGTGCAGCAGATAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCGAAGAAGACCGTGTTTATAATTGGGGCGACAAACAGGCCAGACATTATAGACCCGGCGCTGCTCAGGCCGGGACGTCTGGACCAACTAATATACATCCCGCTCCCTGACGAGTCTTCACGTCTTCAAATTTTCAAAGCATGTCTCCGAAAGTCGCCAGTGTCAAAAGATGTCAATCTATCAGATCTTTCACGGTACACCCATGGCTTTAGTGGAGCTGATATCACTGAAATATGTCAGCGTGCCTGCAAATATGCCATTAGAGAAAATATCGAGAAGGATCTTGAGAGGGAGAGAAAGGAAAGAGAAAACCCAGAAGCCATGGAGGAAGACGACATCGACGAAGTCTCAGAGATAAAGGCAGCACATTTTGAGGAGTCAATGAAGTATGCTCGTCGAAGTGTCAGCGATGCAGACATCAGGAAGTACCAGCTGTTTGCTCAGACCCTACAGCAATCTCGTGGGATCGGATCGGAATTTCGGTTCCCTGATCGAACCGACAATGTAACTGCAGGAGTGGCTGACCCGTTTTCTTCCGCTGTTGCCGCTGGAGATGATGATGATCTTTACAGCTGA 2400 44.71 MADPTGSLASDKAHASSHSSSDHFSYSTIIFITYVIDWLEKISAKTVLNLVVDEAINDDNSVVSLHPATMEKLQFFRGDTILLKGKKRRDTVCVVLSDEQCEEPKIRMNKIVRANLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFSEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVSKDVNLSDLSRYTHGFSGADITEICQRACKYAIRENIEKDLERERKERENPEAMEEDDIDEVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRTDNVTAGVADPFSSAVAAGDDDDLYS 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12282015 12287072 + Cp4.1LG04g15720.1 Cpe04g01568 469130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01568 799 CDD AAA 230 393 - -
Cpe04g01568 799 Pfam Cell division protein 48 (CDC48), domain 2 151 214 IPR004201 -
Cpe04g01568 799 SUPERFAMILY ADC-like 48 129 IPR009010 -
Cpe04g01568 799 PANTHER AAA-FAMILY ATPASE 45 459 - -
Cpe04g01568 799 PANTHER AAA-FAMILY ATPASE 463 773 - -
Cpe04g01568 799 Gene3D - 463 643 IPR027417 -
Cpe04g01568 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 460 IPR027417 -
Cpe04g01568 799 Pfam Cell division protein 48 (CDC48), N-terminal domain 50 130 IPR003338 -
Cpe04g01568 799 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Cpe04g01568 799 MobiDBLite consensus disorder prediction 1 21 - -
Cpe04g01568 799 Pfam AAA+ lid domain 416 458 IPR041569 -
Cpe04g01568 799 Pfam AAA+ lid domain 665 704 IPR041569 -
Cpe04g01568 799 MobiDBLite consensus disorder prediction 765 799 - -
Cpe04g01568 799 Pfam ATPase family associated with various cellular activities (AAA) 510 643 IPR003959 GO:0005524|GO:0016887
Cpe04g01568 799 Pfam ATPase family associated with various cellular activities (AAA) 264 393 IPR003959 GO:0005524|GO:0016887
Cpe04g01568 799 Gene3D - 647 755 - -
Cpe04g01568 799 SMART CDC48_N_2 49 132 IPR003338 -
Cpe04g01568 799 SMART AAA_5 260 396 IPR003593 -
Cpe04g01568 799 SMART AAA_5 506 645 IPR003593 -
Cpe04g01568 799 Gene3D - 39 131 - -
Cpe04g01568 799 Gene3D - 395 462 - -
Cpe04g01568 799 SUPERFAMILY Cdc48 domain 2-like 131 223 IPR029067 -
Cpe04g01568 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 756 IPR027417 -
Cpe04g01568 799 SMART CDC48_2_2 149 215 IPR004201 -
Cpe04g01568 799 Gene3D - 229 393 IPR027417 -
Cpe04g01568 799 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 463 773 - -
Cpe04g01568 799 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 45 459 - -
Cpe04g01568 799 CDD AAA 476 643 - -
Cpe04g01568 799 Gene3D - 132 228 - -
Cpe04g01568 799 ProSitePatterns AAA-protein family signature. 613 631 IPR003960 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01568 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - csv:101205889 1423.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00187 Cpe-Chr3:928604 Cpe04g01568 Cpe-Chr4:12282015 0 dispersed
Cpe04g01568 Cpe-Chr4:12282015 Cpe10g00233 Cpe-Chr10:1359701 0 dispersed
Cpe09g00656 Cpe-Chr9:4959045 Cpe04g01568 Cpe-Chr4:12282015 4.02E-33 dispersed
Cpe20g00662 Cpe-Chr20:4207139 Cpe04g01568 Cpe-Chr4:12282015 1.96E-42 dispersed
Cpe04g01568 Cpe-Chr4:12282015 Cpe08g01089 Cpe-Chr8:8262831 4.06E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01568 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0