Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01569 ATGATGACTCCTAATTTAAACACTTTAGTTGTAATGCCTGTAAATTCATGGACCATCTCTTCATTTATCCTAATCCTATGCCTTTGTACTGTTTCCGCCATTAATGAACAGGGCCAAGCTCTGCTCTCTTGGAAGCTAAGTTTCAAGGGATCCAACAGGGTGCTAAGTAATTGGGACCCCAACAATGAAACTCCATGTGGGTGGTTTGGAATCACTTGCAATAAGAACAGACAAGTAGTGGAAGTAGTTTTGAGGAATGTGAACTTACCCGGTGAGCTTCCATGGAATTTATCTTCGTTCTTGTCGTTGAACAAGCTCGTCTTGTCGGGAGCCAATCTCACCGGCTCTATTCCTAAACAGATCGGTGCTCTCAGCCAGTTGGGGACCTTGGAACTCAGTGACAATGGATTGACTGGAGAAATTCCTAGTGAAATATGCGCTTTGATGAATCTTGAACAGCTTTACCTGAATTCGAATGGTCTTGAAGGCTCAATCCCTGCAGGGATCGGGAATCTCACGAACTTGAAGGAGCTGATTCTCTATGATAATCAGTTGAGCGGTGAAATTCCGGTTAGTATAGGGAATTTGAGGCGGATTGAAGTGATTAGAGCTGGGGGGAACAAGAACTTACATGGCTCTGTGCCGGAAGAAATTGGTAACTGCAGCAATTTGGTGATTCTTGGGCTAGCTGAAACCAGCATCTCCGGCTTTCTTCCGGCCAGTCTTGGCTTTCTCAAGAAGCTTCAGACGTTGGCAATCTATACTACTCTTCTCTCCGGTCAGATTCCTGATGAACTTGGTGACTGCTCTGAGCTTCAAAATCTCTATCTCTACCAGAACTCGCTCTCTGGTTCGATTCCGATCTCATTGGGAAGGTTACGGAATCTTCAAAGTCTGCTTCTATGGCAGAACAATTTGGTCGGCGTTATACCGCCGGAGTTAGGTAGATGTGATCAGTTAACAGTCATCGACGTTTCGATTAATTCTCTGACGGGAAGAATTCCTTCAACATTTGAGAATTTAACAATGCTTGAAGAATTGCTGCTGAGTTCAAATCAATTAACAGGTGAGATTCCGAAGGAAATCGCGAATTGTTCGAGAATCACTCACATTGAGCTTGATTATAATCAGCTCACTGGTACGATTCCCTCTGAATTGGGGAATCTCGCCAATTTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCATCCACCATTTCCAATTGTCGCAATCTCGAGGCCTTGGATCTATCACTGAATGCCTTGACTGTTGAAGAAGCTTTCCAAGCTTTCGTTGATCTTTCAAATAACCTAATCGAAGGGGCGCCGATTCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCGGGGCCTATTCCTACGGAAATCGGTTCCTGCTTGAAATTACAGTTACTGGATTTAAGTTGCAATCAACTATCCGGGAACATTCCACCGAGCTTAGGCAAGATTCCTTCACTCGAAATCGGTCTCAATCTGAGCTTAAACCAATTAACCGGCAAGATTCCGCCGGAGTTTGCAAATCTAGACATGCTCGGGTCATTGGACCTCTCTTACAATCAACTCTCAGGCGACCTCCACATTCTCGCAGAACTGCAAAATCTCGTGGTTCTCAATGTATCTCACAACAATTTCTCAGGACGCGTACCTGAGACGCCATTCTTCGCGCAGCTCCCTTTGAGCGTTCTCTCCGGAAACCCGGAGTTATGCTTCGCCGGCGAGAAGTGCTACGCCGATGGCCATGGCAGCGGCGCTCCCCACACGCTAGCGGCTCGAGTGGCCATGATTGTATTGCTGTGCACGGCATGCGTACTGCTACTAGCGGCAGTTTATATCGTTCTCAAAGATAGACATTCATGTCGGGGATACTTCAATGGGTCCCGCGGCGAAGATTCAGACGACGCCTTTGACAGCGACTTGGAGCTTGGCTCTGGCTGGGAAGTGACACTATACCAGAAGCTCGATCTTCCGATCTCTGAGGTAATCAAATGCTTAACGCCGGCTAATGTCATCGGCCGCGGCAAGACCGGCGTCGTGTACAGAGCCTGCATCTCATCAGGTCTAACAATCGCTGTGAAGCGATTCCGATCATCGGAAGTGTTCTCAGCGGCGGCGTTTTCATCCGAAATTGCAACATTGGCGAGGATTCGACATCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAATTGCTGTTCTACGACTACTTGCCAAATGGGAATTTGGGTGCGTTACTACACGAGGGGAATGGGCGCGTGGGGCTGGACTGGGAGAGTAGATTCAAGATAGCGTTGGGTGTGGCGGAGGGATTGGCTTATTTGCACCACGACTGCGTGCCGGCAATATTGCACCGGGACGTGAAGGCTCACAATATTCTGTTGGGGGATTGCTACGAAGCGTGTTTGGCGGACTTTGGGCTCGCTCGGTTGGTTGAAGATGGTCCGAGCGGTTCGTCTTCAACGAACCCTCAGTTTGCTGGGTCTTACGGCTATTTTGCACCTGAATATGGCTGCATGTTAAGGATCACAGACAAGAGTGACGTGTATAGCTACGGTGTCGTTTTGCTGGAGTTAATAACGGGCAAAAAACCTGTAGATTCCTCATTCGCAGAAGGCCAACACGTGATTCAATGGGTGAGAGACCATCTGAAGAAGAAGAAGAATCCAATTTCAATACTAGATACGAAACTTCAAGGGCGACCCGACTCGATAATCCAAGAGATTTTACAAGCATTAGGAATCTCTTTGCTTTGCACAAGTGACCGTGCTGAAGATCGACCAACAATGAAAGACGTGACGGCTCTTTTACGTGAGATCCGACAAGACCAACTATCAACAACAACAGATGTCGTTGACAAGCCGCCACAAAAGAAGAGCAACACGACAAGCTTGGACACAACGACATCGATTTTATCCTCATCTTCTATGGCGAATCATTTACCTTTTGCACTACCCGTTCAAGAGTCGTCACATTGCTCTTATGCTTCGTTGTCCTCGTTGGGTGCATATTTTTCACGCAACCAGTGA 3093 47.4 MMTPNLNTLVVMPVNSWTISSFILILCLCTVSAINEQGQALLSWKLSFKGSNRVLSNWDPNNETPCGWFGITCNKNRQVVEVVLRNVNLPGELPWNLSSFLSLNKLVLSGANLTGSIPKQIGALSQLGTLELSDNGLTGEIPSEICALMNLEQLYLNSNGLEGSIPAGIGNLTNLKELILYDNQLSGEIPVSIGNLRRIEVIRAGGNKNLHGSVPEEIGNCSNLVILGLAETSISGFLPASLGFLKKLQTLAIYTTLLSGQIPDELGDCSELQNLYLYQNSLSGSIPISLGRLRNLQSLLLWQNNLVGVIPPELGRCDQLTVIDVSINSLTGRIPSTFENLTMLEELLLSSNQLTGEIPKEIANCSRITHIELDYNQLTGTIPSELGNLANLTLLFLWQNKLEGSIPSTISNCRNLEALDLSLNALTVEEAFQAFVDLSNNLIEGAPIPSFGSFNSLTKLVLSNNRFSGPIPTEIGSCLKLQLLDLSCNQLSGNIPPSLGKIPSLEIGLNLSLNQLTGKIPPEFANLDMLGSLDLSYNQLSGDLHILAELQNLVVLNVSHNNFSGRVPETPFFAQLPLSVLSGNPELCFAGEKCYADGHGSGAPHTLAARVAMIVLLCTACVLLLAAVYIVLKDRHSCRGYFNGSRGEDSDDAFDSDLELGSGWEVTLYQKLDLPISEVIKCLTPANVIGRGKTGVVYRACISSGLTIAVKRFRSSEVFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDCYEACLADFGLARLVEDGPSGSSSTNPQFAGSYGYFAPEYGCMLRITDKSDVYSYGVVLLELITGKKPVDSSFAEGQHVIQWVRDHLKKKKNPISILDTKLQGRPDSIIQEILQALGISLLCTSDRAEDRPTMKDVTALLREIRQDQLSTTTDVVDKPPQKKSNTTSLDTTTSILSSSSMANHLPFALPVQESSHCSYASLSSLGAYFSRNQ 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12287161 12291269 - Cp4.1LG04g15810.1 Cpe04g01569 469131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01569 1030 Gene3D Ribonuclease Inhibitor 34 192 IPR032675 -
Cpe04g01569 1030 Gene3D Ribonuclease Inhibitor 204 342 IPR032675 -
Cpe04g01569 1030 Gene3D Ribonuclease Inhibitor 343 594 IPR032675 -
Cpe04g01569 1030 Pfam Protein kinase domain 687 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01569 1030 SMART LRR_typ_2 172 196 IPR003591 -
Cpe04g01569 1030 SMART LRR_typ_2 341 365 IPR003591 -
Cpe04g01569 1030 SMART LRR_typ_2 389 413 IPR003591 -
Cpe04g01569 1030 SMART LRR_typ_2 550 583 IPR003591 -
Cpe04g01569 1030 SMART LRR_typ_2 124 148 IPR003591 -
Cpe04g01569 1030 SMART LRR_typ_2 293 317 IPR003591 -
Cpe04g01569 1030 SMART LRR_typ_2 454 478 IPR003591 -
Cpe04g01569 1030 SUPERFAMILY RNI-like 207 569 - -
Cpe04g01569 1030 ProSitePatterns Protein kinases ATP-binding region signature. 689 711 IPR017441 GO:0005524
Cpe04g01569 1030 PANTHER OS01G0170300 PROTEIN 435 979 - -
Cpe04g01569 1030 MobiDBLite consensus disorder prediction 967 988 - -
Cpe04g01569 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Cpe04g01569 1030 SMART serkin_6 683 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01569 1030 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 435 979 - -
Cpe04g01569 1030 Gene3D Phosphorylase Kinase; domain 1 668 758 - -
Cpe04g01569 1030 ProSiteProfiles Protein kinase domain profile. 683 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01569 1030 SUPERFAMILY Protein kinase-like (PK-like) 675 958 IPR011009 -
Cpe04g01569 1030 Gene3D Transferase(Phosphotransferase) domain 1 759 984 - -
Cpe04g01569 1030 SUPERFAMILY L domain-like 58 268 - -
Cpe04g01569 1030 Pfam Leucine rich repeat 319 378 IPR001611 GO:0005515
Cpe04g01569 1030 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 427 - -
Cpe04g01569 1030 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Cpe04g01569 1030 PANTHER OS01G0170300 PROTEIN 19 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01569 Cpe-Chr4:12287161 Cpe06g00839 Cpe-Chr6:5385336 0 dispersed
Cpe06g00261 Cpe-Chr6:1405488 Cpe04g01569 Cpe-Chr4:12287161 6.61E-92 dispersed
Cpe07g00201 Cpe-Chr7:1285539 Cpe04g01569 Cpe-Chr4:12287161 2.11E-15 dispersed
Cpe10g01188 Cpe-Chr10:8803633 Cpe04g01569 Cpe-Chr4:12287161 1.06E-135 dispersed
Cpe19g00055 Cpe-Chr19:431580 Cpe04g01569 Cpe-Chr4:12287161 9.84E-24 dispersed
Cpe02g01377 Cpe-Chr2:12102329 Cpe04g01569 Cpe-Chr4:12287161 1.28E-104 transposed
Cpe18g00852 Cpe-Chr18:7862117 Cpe04g01569 Cpe-Chr4:12287161 4.06E-14 wgd
Cpe04g01569 Cpe-Chr4:12287161 Cpe09g01014 Cpe-Chr9:8946550 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62381 PF00069 Pkinase 2.10E-38 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01569 - - csv:101206847 1247.26