Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01570 ATGGCGTCGCACGGTCATCTTGAGGAGGATGATGATTTTGGAGGCGATTTCACTGGAACGCACAACAATAGTCATTCAGGAAATAAGAGAGGTTTTGGCGATCTCGAAGATGAAGAGGATGACTTATTTGGTTCCAAAAAGGCTAACGCTAAAGTCGAAGAAACTGCTCCAGGTGTAGCGACAGGAATGATTCTGTCACTTCGTGAGAGTCTTAAAAGCTATGAGGATACACTCACAACATGCCGGACAGAGCTTGACATTGCCAAGTCTGAGATTCAGAAGTGGATTTCTTCATTTCAGAATGAGAATTTCATTCCTGCTGGTGCTTCCCCTGAACCTAAATTTGTGATCAGCTTTCTGCAATCCCTGAAGTTCTCGGAGGAGTCTCTCAGAGACCAGCTAGAAAAGGCAAAGAAGAAGGAAGCCGCTTTTATCGTTACATTTGCAAAACGAGAGCAGGAGATTGCAGAGTTGAAGGCAAGCTGCAGTCCGGGACTTGAAAGCACAGTTGAAGCCACCATCCATGCAGGTACTAATGACGCTTTAACTTTGGCTAGAAGATTATTGATAGATCCTGCAATACATGAAGAGTTTACTCGTCTGAAGAGTTTGGTTGAGGAGAAAGACAAAAAGGTAAAGGAGCTGCAAGATAACATTGCCGCAGTAAGTTTTACTCCATCAAGCAAGATGGGTAAAATGCTGATGGCTAAATGTAGGACTCTGCAAGAGGAAAATGAAGAGATAGGAAATCAAGCTGCTGAAGGAAAGATGCATGAGTTAGGAATAAAGCTTGCGTTGCAGAAATCTCAAAATACGGAACTTAGAAATCAGTACGAAGCTTTGCAGAAATATATGGAGGGGCTGACAAATGACGTTGAAAGGTCAAACGAATTGGCTATCGTATTGCAAGAGAAGCTTGCAGAGAAGGATCGGGAGCTTCAAAGCTTCAAGGAGGCTTTACAGCAGCCGAGGAGTCCAACGGTCGAGAATAAAGTTGATTCACCCCCTGCCGAGAAGCCACCCAAAGATGAGGTGGTTATTTCCGGCGATGCTGAAAGCTGA 1062 44.26 MASHGHLEEDDDFGGDFTGTHNNSHSGNKRGFGDLEDEEDDLFGSKKANAKVEETAPGVATGMILSLRESLKSYEDTLTTCRTELDIAKSEIQKWISSFQNENFIPAGASPEPKFVISFLQSLKFSEESLRDQLEKAKKKEAAFIVTFAKREQEIAELKASCSPGLESTVEATIHAGTNDALTLARRLLIDPAIHEEFTRLKSLVEEKDKKVKELQDNIAAVSFTPSSKMGKMLMAKCRTLQEENEEIGNQAAEGKMHELGIKLALQKSQNTELRNQYEALQKYMEGLTNDVERSNELAIVLQEKLAEKDRELQSFKEALQQPRSPTVENKVDSPPAEKPPKDEVVISGDAES 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12292947 12301121 + Cp4.1LG04g15700.1 Cpe04g01570 469132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01570 353 Coils Coil 71 91 - -
Cpe04g01570 353 MobiDBLite consensus disorder prediction 1 40 - -
Cpe04g01570 353 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 1 324 - -
Cpe04g01570 353 Coils Coil 198 218 - -
Cpe04g01570 353 Coils Coil 120 140 - -
Cpe04g01570 353 Coils Coil 264 319 - -
Cpe04g01570 353 MobiDBLite consensus disorder prediction 1 16 - -
Cpe04g01570 353 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 1 324 IPR033757 GO:0000381|GO:0005634|GO:0080009
Cpe04g01570 353 MobiDBLite consensus disorder prediction 317 353 - -
Cpe04g01570 353 Pfam WTAP/Mum2p family 136 297 IPR033757 GO:0000381|GO:0005634|GO:0080009
Cpe04g01570 353 MobiDBLite consensus disorder prediction 335 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01570 K22824 WTAP; pre-mRNA-splicing regulator WTAP - csv:101204933 520.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01570 Cpe18g00855 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00855 Cpe-Chr18:7881767 Cpe04g01570 Cpe-Chr4:12292947 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g796 . . Bda06g00611 . . . . Bma12g01046 . . Cma10g00110 Cma11g00082 Car10g00099 Car11g00075 Sed08g0092 . Cpe04g01570 Bhi02g00492 Tan09g2284 Cmetu02g1221 . Hepe09g0221 . . Cla06g01683 Cam06g1870 Cec06g1919 Cco06g1924 Clacu06g1825 Cmu06g1768 Cre06g2584 . . Cone13ag0158 Cone19ag0157 . . . . . Blo15g00260 . . Bpe07g00852 . . . . Cmo10g00114 Cmo11g00082 . . . . . Cpe18g00855 . . . . . . . . . . . . . . Lsi06g01575 Csa01g00127 . Cme02g01996
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005496 1 1 1 1 1 2 1 2 2 0 2 2 1 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01570 Cpe_Chr04 FPKM 7.885331 8.602507 6.177641 6.930342 4.60454 5.237797 4.465191 12.869742 12.158543 13.66688